PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
78101-78150 / 86044 show all
anovak-vgSNPtiHG002compoundhethetalt
0.0000
15.8895
0.0000
0.0000
92487000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.2933
93.2116
99.5857
27.6338
668748767312828
100.0000
ckim-isaacINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.2162
86.6135
98.5938
42.4667
315148731554526
57.7778
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1068
94.7612
99.5714
64.0076
880948788283838
100.0000
ltrigg-rtg2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.1071
96.8411
99.4065
70.7611
14930487154099291
98.9130
jpowers-varprowlSNPtvmap_l125_m2_e0*
97.1791
97.0465
97.3121
78.1370
1600248716002442119
26.9231
jli-customINDEL*HG002complexvarhetalt
92.1678
86.8343
98.1995
67.3509
321248734366362
98.4127
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
75.7194
61.1022
99.5294
32.2169
76548784643
75.0000
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1552
98.5347
99.7836
72.0617
32749487327427145
63.3803
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
83.1268
71.4871
99.2941
36.3772
122148742233
100.0000
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
98.7858
98.2767
99.3002
57.2345
2777348727812196123
62.7551
ghariani-varprowlSNPtimap_l100_m2_e0*
98.5956
99.0053
98.1892
70.8668
4847448748476894185
20.6935
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
56.3707
87.9455
41.4787
65.8135
3553487356850344915
97.6361
gduggal-snapfbSNP*map_l125_m0_e0het
95.0102
96.1466
93.9004
73.7575
1217648812177791378
47.7876
gduggal-snapplatINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
0488000
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
22.8209
19.0713
28.4058
74.7623
115488982473
1.2146
gduggal-snapfbINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
0488000
dgrover-gatkINDELD1_5HG002compoundhethetalt
97.3579
95.2232
99.5905
58.8743
972848897294039
97.5000
anovak-vgINDELI1_5map_l100_m2_e0het
48.1704
38.4615
64.4359
89.9093
30548833718631
16.6667
ckim-gatkSNPtvmap_l250_m1_e0homalt
60.1307
42.9907
100.0000
93.6519
36848836800
jli-customINDELD1_5*hetalt
97.3277
95.2367
99.5126
64.3126
975748898014846
95.8333
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
24.4217
20.7792
29.6128
67.8388
128488130309308
99.6764
gduggal-bwavardSNP*map_l125_m0_e0*
93.5292
97.4826
89.8840
82.4074
1889748818668210198
4.6645
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
69.9400
54.1784
98.6348
79.3006
57748857887
87.5000
eyeh-varpipeSNPtiHG002complexvar*
99.8888
99.9038
99.8738
17.3355
507948489484239612191
31.2092
egarrison-hhgaSNP*map_l100_m2_e0het
99.3648
98.9461
99.7870
65.4283
45910489459119831
31.6327
ghariani-varprowlSNPtimap_l100_m2_e1*
98.6004
99.0118
98.1924
70.8832
4899648948998902186
20.6208
ndellapenna-hhgaSNP*HG002compoundhethet
98.0271
96.5510
99.5491
42.9549
13689489136876236
58.0645
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.6737
94.1848
99.2978
59.9146
792048979195651
91.0714
raldana-dualsentieonINDELD1_5HG002complexvar*
99.1616
98.5022
99.8299
57.5831
32225490322765541
74.5455
egarrison-hhgaSNP*map_l100_m2_e1het
99.3694
98.9552
99.7871
65.4429
46408490464099931
31.3131
hfeng-pmm3SNPtvHG002compoundhethet
94.3711
89.5142
99.7852
53.0848
4183490418192
22.2222
ckim-dragenSNPtv**
99.8136
99.9495
99.6782
25.0811
9692004909694993130164
5.2396
anovak-vgSNPti*hetalt
0.0000
15.8076
0.0000
0.0000
92490000
jmaeng-gatkSNPtvmap_l250_m1_e0homalt
59.8528
42.7570
99.7275
93.2050
36649036611
100.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1659
93.1102
99.4290
31.4906
662249066173838
100.0000
jli-customINDELD6_15**
98.6381
98.1220
99.1595
51.2932
2560249025602217202
93.0876
gduggal-snapvardSNP*map_l150_m1_e0homalt
97.6436
95.6533
99.7185
71.0895
10783490106273024
80.0000
gduggal-snapvardSNPtvmap_l125_m1_e0*
93.0563
96.9343
89.4767
78.3907
15525491154751820120
6.5934
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
0491000
ckim-vqsrSNP*map_l250_m0_e0homalt
35.9844
21.9396
100.0000
98.1124
13849113800
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_11to50*
93.1299
89.8491
96.6594
59.1348
4346491445615472
46.7532
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
0491000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.2676
97.9992
98.5375
41.6126
2404949124053357339
94.9580
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8663
93.9345
99.9869
25.8659
7604491764010
0.0000
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.6982
92.8933
98.6777
52.9173
641849164188675
87.2093
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
0491000
jpowers-varprowlSNPtvmap_l125_m2_e1*
97.1894
97.0523
97.3269
78.1843
1616649116166444120
27.0270
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.8472
76.6302
97.5845
55.5436
161049116164037
92.5000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.2920
98.3891
98.1951
74.4975
2998949129542543428
78.8214