PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
78051-78100 / 86044 show all
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2859
91.1304
99.8384
63.0944
4942481494485
62.5000
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3985
99.2535
99.5440
74.5809
6395048163963293257
87.7133
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
72.9935
63.5053
85.8149
62.8966
837481853141132
93.6170
egarrison-hhgaINDEL*HG002compoundhethet
60.4981
88.2511
46.0244
58.9093
3613481470655195300
96.0319
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
94.1010
95.3685
92.8667
39.9701
99254829699745638
85.6376
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
82.5318
70.7702
98.9822
46.3359
116748211671211
91.6667
mlin-fermikitSNPtisegdup*
98.0976
97.5329
98.6689
85.0585
190554821905125786
33.4630
ndellapenna-hhgaSNPtv*homalt
99.9152
99.8722
99.9583
20.9089
376641482376648157123
78.3439
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
87.2842
83.8309
91.0342
39.5768
24994826681658602
91.4894
hfeng-pmm3INDELD1_5HG002complexvar*
99.2121
98.5267
99.9072
56.6840
32233482322853019
63.3333
ghariani-varprowlSNPtimap_l100_m1_e0*
98.6066
98.9944
98.2219
68.9891
4744948247451859183
21.3038
gduggal-snapplatSNPtimap_l150_m0_e0homalt
90.3251
82.5063
99.7809
77.2958
2278483227755
100.0000
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
3.5608
1.8293
66.6667
94.3750
9483633
100.0000
gduggal-bwavardSNPtimap_l150_m1_e0*
95.2687
97.5497
93.0920
81.8831
1922948319055141491
6.4356
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
43.4690
29.6943
81.0811
66.1792
2044831503534
97.1429
ciseli-customINDEL*map_l125_m2_e1het
69.1293
65.6960
72.9412
91.6361
925483930345205
59.4203
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.2901
93.2087
99.5822
26.9805
662948366732828
100.0000
egarrison-hhgaSNP*map_l100_m1_e0het
99.3656
98.9352
99.7999
63.8790
44876483448779031
34.4444
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
83.6839
72.6708
98.6312
33.2487
128748412971813
72.2222
egarrison-hhgaINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.6760
96.8929
98.4720
68.6413
1509348415080234134
57.2650
ckim-dragenSNPtimap_siren*
99.0224
99.5177
98.5321
56.8522
99871484998801488162
10.8871
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
2.7934
1.4257
68.7500
77.7778
74841153
60.0000
mlin-fermikitINDEL*map_l150_m2_e1het
63.3120
47.6190
94.4325
85.0560
4404844412612
46.1538
ltrigg-rtg2INDELD1_5*het
99.5293
99.4473
99.6114
53.9225
870904848688933971
20.9440
ndellapenna-hhgaSNPtimap_l100_m2_e0het
99.1023
98.4194
99.7947
64.2605
30138484301406224
38.7097
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
52.6126
49.5308
56.1033
72.8835
475484478374353
94.3850
jli-customSNP*map_sirenhet
99.5222
99.4681
99.5764
53.8949
905074849050138576
19.7403
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.0567
97.5229
90.8285
81.7751
1909448519163193559
3.0491
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.0567
97.5229
90.8285
81.7751
1909448519163193559
3.0491
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.7034
94.0086
99.5573
32.9140
761048576463434
100.0000
ndellapenna-hhgaSNP*map_l100_m0_e0het
98.6808
97.7128
99.6681
67.9602
20720485207216932
46.3768
ndellapenna-hhgaSNPtimap_l100_m2_e1het
99.1089
98.4335
99.7937
64.2644
30475485304776324
38.0952
mlin-fermikitINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.9424
86.3802
89.5622
71.3205
30764853089360326
90.5556
dgrover-gatkINDELD6_15**
98.3523
98.1412
98.5642
55.1444
2560748525606373340
91.1528
ckim-isaacINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.0649
86.2878
98.6710
63.3131
305248530444124
58.5366
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2521
96.8864
99.6568
72.9143
15092485151005245
86.5385
anovak-vgINDELI1_5HG002compoundhethet
51.6510
42.9412
64.7929
62.2549
365485455324741995
80.6386
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.5920
97.2554
97.9309
57.6692
1718648517181363345
95.0413
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5920
97.2554
97.9309
57.6692
1718648517181363345
95.0413
gduggal-snapvardSNPtisegdup*
98.3714
97.5175
99.2403
92.6560
190524851894114546
31.7241
hfeng-pmm2INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.1791
87.3169
99.8851
40.5059
3339485347744
100.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.0457
84.6445
98.4943
38.8914
267948626824128
68.2927
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
48.2628
55.3309
42.7960
40.3404
602486600802781
97.3815
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
51.9508
35.3723
97.7778
57.1429
26648626465
83.3333
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1124
94.7719
99.5714
64.0050
881048688293838
100.0000
ciseli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
51.2986
77.9991
38.2164
61.6156
1723486172727922527
90.5086
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
88.0705
92.7235
83.8622
38.1946
6193486618411901162
97.6471
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.8163
0.4098
100.0000
90.4762
2486200
ghariani-varprowlSNP**homalt
99.7891
99.9588
99.6200
19.7823
1179670486117979245002208
49.0667
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.8458
93.1665
98.6838
27.9872
662648666738986
96.6292