PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
77201-77250 / 86044 show all
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.4617
94.1911
98.8445
26.3329
648640065017673
96.0526
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.0371
93.4243
94.6580
64.2218
56834005564314298
94.9045
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
90.6304
83.9615
98.4500
76.1644
20944002096338
24.2424
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
78.5045
69.6510
89.9365
50.9342
918400992111111
100.0000
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
5.7971
3.3816
20.2899
80.2292
14400145547
85.4545
cchapple-customSNPtimap_l150_m1_e0het
95.9987
96.7583
95.2510
80.3175
1196940111974597158
26.4657
gduggal-snapfbINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
0.0000
0.0000
100.0000
0.0000
0401100
gduggal-snapplatINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
0.0000
0.0000
0.0000
0401000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
42.3952
29.7723
73.6000
86.9452
1704011846626
39.3939
gduggal-snapvardSNPtvmap_l100_m1_e0het
92.4877
97.3990
88.0480
78.4967
15016401149622031139
6.8439
hfeng-pmm1SNP*map_l100_m1_e0het
99.4173
99.1159
99.7205
63.9471
449584014494712632
25.3968
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
96.9441
95.7602
98.1576
42.5181
90574019057170166
97.6471
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.6141
91.5968
100.0000
29.3704
4371401442000
jli-customSNP*map_l100_m1_e0het
99.2812
99.1159
99.4470
63.0672
449584014495525062
24.8000
jli-customSNP*map_l100_m2_e0het
99.2823
99.1336
99.4314
64.8428
459974024599426362
23.5741
jli-customSNP*map_l100_m2_e1het
99.2878
99.1428
99.4333
64.8837
464964024649326562
23.3962
jpowers-varprowlINDELI6_15HG002complexvarhet
76.9804
82.9299
71.8274
56.3262
19534021981777772
99.3565
jpowers-varprowlSNP*map_l250_m2_e0*
95.0584
94.9017
95.2157
91.6500
7483402748337693
24.7340
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
60.9836
60.0000
62.0000
58.6311
603402682418306
73.2057
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.4673
97.4995
99.4544
67.8523
15675402156768670
81.3953
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.4673
97.4995
99.4544
67.8523
15675402156768670
81.3953
ciseli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
87.9780
97.7891
79.9560
49.1916
17781402178154466191
4.2768
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.4040
89.7684
97.3466
51.5533
352740235229690
93.7500
gduggal-bwafbINDELI16_PLUSHG002complexvarhet
56.0161
39.5489
95.9799
46.2162
2634023821616
100.0000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
80.6871
76.7630
85.0340
31.9444
13284021375242240
99.1736
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
59.2949
45.8221
83.9901
84.3906
340402341651
1.5385
gduggal-bwaplatINDELD1_5map_l125_m1_e0*
77.0354
63.0515
98.9899
94.0592
68640268671
14.2857
qzeng-customSNPtimap_l250_m0_e0het
67.5985
56.9593
83.1250
98.4261
53240253210885
78.7037
qzeng-customINDEL*map_l150_m2_e0*
81.1578
71.3778
94.0432
94.0095
100540312638039
48.7500
ciseli-customINDELI1_5map_l125_m2_e0*
59.1149
52.9755
66.8639
88.9180
454403452224193
86.1607
jpowers-varprowlSNPtimap_l125_m0_e0het
95.7486
95.1228
96.3826
81.5656
78604037860295104
35.2542
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.7472
94.1475
99.4946
23.8423
648340364963333
100.0000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.5589
95.6625
99.5320
31.5275
888840389324240
95.2381
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.5589
95.6625
99.5320
31.5275
888840389324240
95.2381
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
93.5449
90.4908
96.8125
75.4534
3835403391812910
7.7519
anovak-vgINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
13.0521
7.5688
47.3684
59.8945
33403728025
31.2500
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
24.4860
0.0000
0.0000
131404000
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
94.7847
96.0993
93.5056
43.8048
99534049949691301
43.5601
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
68.5647
57.5184
84.8624
93.9078
5474045559945
45.4545
gduggal-snapfbINDELD16_PLUSHG002compoundhethet
0.4926
0.2469
100.0000
0.0000
1404100
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
66.6828
57.1125
80.1061
51.0601
538404906225212
94.2222
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.5410
98.7028
87.1034
79.6250
30739404308324565319
6.9880
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.5410
98.7028
87.1034
79.6250
30739404308324565319
6.9880
gduggal-snapplatSNPtiHG002compoundhethomalt
95.6482
94.5361
96.7868
36.7388
69904046928230158
68.6957
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_11to50*
96.8519
94.5071
99.3160
27.2218
695140469704831
64.5833
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
73.1222
57.8728
99.2832
78.7023
55540455442
50.0000
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
1.7032
0.0000
0.0000
7404000
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
97.6431
96.1084
99.2277
42.1750
100024051503211772
61.5385
gduggal-bwaplatINDELD1_5HG002complexvarhetalt
80.5939
70.0444
94.8847
81.8132
9474059465150
98.0392
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.2458
97.9315
96.5697
82.2940
191744051928468559
8.6131