PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
76901-76950 / 86044 show all
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
86.2651
0.0000
0.0000
2349374000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.7653
92.1626
99.6610
30.6426
439837444101515
100.0000
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
66.2142
52.8967
88.4937
95.5535
420374423557
12.7273
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
44.8523
34.5009
64.0777
67.1975
19737419811178
70.2703
gduggal-snapvardSNPtvmap_l100_m0_e0*
91.8069
96.6258
87.4458
78.2460
1071037410685153485
5.5411
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
32.1041
23.2033
52.0833
72.0117
113374100921
1.0870
jpowers-varprowlSNPtvmap_l150_m1_e0*
96.7188
96.5726
96.8655
80.4419
105383741053834191
26.6862
jli-customSNP*map_l100_m0_e0*
99.1662
98.8612
99.4730
63.5990
324673743246717259
34.3023
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.7859
91.9518
99.9537
23.9402
4273374432222
100.0000
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.8618
90.5873
97.3819
58.7738
360937536089792
94.8454
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
77.2589
0.0000
0.0000
1274375000
qzeng-customINDELI1_5map_l100_m1_e0*
81.6840
71.9940
94.3881
86.6528
96437513968316
19.2771
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.8179
94.0683
97.6337
60.8078
59473756973169154
91.1243
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.8179
94.0683
97.6337
60.8078
59473756973169154
91.1243
gduggal-snapfbSNPtvmap_l150_m1_e0*
96.2193
96.5634
95.8777
77.9802
1053737510536453179
39.5143
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
38.0952
23.6253
98.3051
64.2424
11637511622
100.0000
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
50.1218
86.1980
35.3337
81.4035
234237524144418249
5.6360
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_51to200*
83.0581
82.1038
84.0349
57.1491
17253761637311307
98.7138
qzeng-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
73.2113
82.3308
65.9106
63.8478
175237619471007294
29.1956
mlin-fermikitSNP*map_l250_m0_e0homalt
49.5108
40.2226
64.3766
80.0000
253376253140131
93.5714
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50*
94.6955
94.4156
94.9771
66.7371
63573766429340300
88.2353
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
54.7528
73.3333
43.6844
58.3973
1034376104113421318
98.2116
egarrison-hhgaSNP*map_l125_m2_e1het
99.2353
98.7314
99.7444
71.4034
29264376292647528
37.3333
ckim-isaacINDELD1_5map_sirenhet
90.2008
83.4870
98.0888
79.1671
190137618993714
37.8378
rpoplin-dv42SNPtimap_sirenhet
99.5664
99.3973
99.7362
53.8516
620063766199716494
57.3171
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
1.0526
0.0000
0.0000
4376000
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
74.0664
64.1905
87.5339
61.2598
6743766469282
89.1304
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2930
95.5286
99.1239
61.6524
803337680337162
87.3239
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
25.7312
15.1242
86.1538
28.5714
673765699
100.0000
gduggal-snapplatINDELD1_5map_l100_m2_e0*
85.5517
80.3655
91.4534
91.1012
1539376178716733
19.7605
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.7895
0.0000
0.0000
3377000
dgrover-gatkSNPtv**
99.9211
99.9611
99.8812
22.3092
969313377969227115381
7.0252
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.6530
90.3259
97.2345
54.0242
3520377351610081
81.0000
ndellapenna-hhgaSNPtimap_l125_m2_e1het
98.8822
98.0248
99.7547
70.7116
18710377187104620
43.4783
cchapple-customSNPtimap_l125_m2_e0homalt
98.3080
96.6808
99.9909
63.9160
109813771097911
100.0000
cchapple-customSNPtimap_l125_m2_e1homalt
98.3230
96.7097
99.9910
63.9684
110813771107811
100.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9293
97.2651
98.6025
47.2860
1340837713406190185
97.3684
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
82.8529
82.0562
83.6653
62.9041
17243771680328287
87.5000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8560
94.5289
99.3006
52.1150
653137865314641
89.1304
dgrover-gatkSNP*map_l100_m1_e0*
99.4999
99.4779
99.5218
66.8041
720253787201434678
22.5434
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
80.7503
68.3682
98.6094
40.8377
817378780119
81.8182
ckim-vqsrSNPtisegdup*
98.8035
98.0652
99.5531
93.1259
1915937819157867
8.1395
gduggal-snapfbSNPtvmap_l150_m2_e0*
96.3189
96.6711
95.9692
79.3481
1097737810976461180
39.0456
gduggal-snapplatINDEL*map_l150_m2_e0*
80.2426
73.1534
88.8532
94.8529
1030378110813920
14.3885
gduggal-snapplatSNPtilowcmp_SimpleRepeat_triTR_11to50het
90.9492
84.7458
98.1326
57.0052
21003782102404
10.0000
gduggal-snapplatINDELI1_5map_sirenhet
80.2443
77.5134
83.1746
91.4579
1303378131026510
3.7736
ltrigg-rtg2SNPti*homalt
99.9701
99.9529
99.9873
15.8538
80265837880255410298
96.0784
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1956
90.5120
98.1916
59.9330
360637836386732
47.7612
raldana-dualsentieonSNPtimap_sirenhet
99.3661
99.3941
99.3382
55.1273
62004378619954138
1.9371
gduggal-bwaplatINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
58.6858
43.1579
91.6667
90.6222
2873782862622
84.6154