PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
76451-76500 / 86044 show all
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0341000
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0341000
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0341000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
84.2141
73.5864
98.4298
33.7451
95034110031615
93.7500
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
93.5967
90.2348
97.2188
50.5577
315134131469073
81.1111
egarrison-hhgaSNP*map_l150_m2_e1*
99.3609
98.9413
99.7840
74.9205
31869341318696932
46.3768
anovak-vgINDEL*map_l150_m1_e0*
72.5622
74.5142
70.7099
89.9578
9973411026425224
52.7059
astatham-gatkSNP*HG002compoundhethet
98.6981
97.5878
99.8340
46.2177
13836342138342322
95.6522
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.8836
92.6404
99.3621
26.9063
430534248293130
96.7742
qzeng-customINDELD1_5HG002complexvarhet
98.6823
98.3530
99.0138
55.4973
2042334221686216103
47.6852
jpowers-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9092
98.7644
97.0687
69.5742
2733634227419828294
35.5072
gduggal-bwafbSNPtimap_l125_m2_e0*
98.9368
98.8697
99.0039
73.9957
299163422991630185
28.2392
gduggal-bwafbSNPtimap_l125_m2_e1*
98.9476
98.8812
99.0140
74.0560
302273423022730185
28.2392
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
9.6515
5.2632
58.0645
68.3673
1934218136
46.1538
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9677
97.9853
99.9699
67.4084
166333421663355
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9677
97.9853
99.9699
67.4084
166333421663355
100.0000
ciseli-customINDEL*map_l150_m2_e1het
67.0194
62.9870
71.6034
93.6172
582342585232136
58.6207
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1468
92.6189
99.9541
23.6736
4304343435722
100.0000
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.9102
91.2700
94.6103
54.6326
35863433581204197
96.5686
jli-customSNP*map_l125_m1_e0het
99.0623
98.7919
99.3341
68.8001
280493432804618854
28.7234
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.6332
95.7628
99.5781
24.7836
775234377883332
96.9697
jli-customINDELD6_15HG002compoundhethetalt
97.6428
95.7919
99.5667
24.6880
780834378123433
97.0588
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_11to50*
96.2926
96.8040
95.7866
41.7994
1038934310503462244
52.8139
rpoplin-dv42SNPtimap_l100_m1_e0*
99.4597
99.2844
99.6356
62.6996
4758834347581174118
67.8161
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.1644
85.5030
99.9515
30.1491
2023343206111
100.0000
gduggal-snapvardSNPtilowcmp_SimpleRepeat_diTR_11to50*
84.7117
92.9088
77.8438
78.8648
44943434455126879
6.2303
gduggal-snapvardSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.0218
96.6030
99.4830
58.8566
975434396225026
52.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.5228
95.7439
99.3691
35.4149
771634377184949
100.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.5228
95.7439
99.3691
35.4149
771634377184949
100.0000
qzeng-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0366
99.3834
98.6923
64.9734
5528834355243732105
14.3443
ltrigg-rtg2SNPtvmap_l100_m1_e0*
99.1748
98.6001
99.7563
54.0248
2415834324152595
8.4746
mlin-fermikitINDEL*map_l125_m0_e0het
57.2159
41.5673
91.7603
82.1524
244343245227
31.8182
mlin-fermikitINDELI1_5map_l100_m2_e1het
71.9569
57.6543
95.6967
78.7456
4673434672112
57.1429
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
80.5397
81.1435
79.9449
69.9648
14763431160291202
69.4158
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
80.5397
81.1435
79.9449
69.9648
14763431160291202
69.4158
hfeng-pmm2INDELD1_5HG002compoundhethet
87.2979
80.1505
95.8449
75.4255
138534313846057
95.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.3126
96.8244
99.8472
79.3514
1045834310458164
25.0000
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
86.0404
76.1806
98.8320
80.6905
10973431100132
15.3846
gduggal-bwaplatINDEL*map_l125_m2_e1homalt
71.4286
55.5556
100.0000
91.6796
43034443000
gduggal-bwavardSNPtimap_l125_m0_e0*
94.2056
97.3045
91.2979
82.1654
1241834412317117466
5.6218
gduggal-snapfbSNPtimap_l125_m0_e0het
95.0321
95.8369
94.2408
72.9383
79193447920484255
52.6860
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
70.5199
59.6244
86.2876
93.0181
5083445168238
46.3415
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.4990
98.1160
98.8851
46.7540
1791534417916202197
97.5248
astatham-gatkSNPtvmap_l250_m1_e0*
92.5829
87.0042
98.9261
90.0355
23033442303257
28.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.5549
95.7315
99.4491
28.9744
771534477624341
95.3488
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.5549
95.7315
99.4491
28.9744
771534477624341
95.3488
jli-customINDELI1_5HG002complexvar*
99.4264
98.9689
99.8882
55.8919
33019344330523727
72.9730
jpowers-varprowlSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.7595
98.7696
96.7698
62.5065
2761534427711925281
30.3784
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1200
95.0044
99.3320
25.8972
654234465434443
97.7273
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
92.8925
86.9894
99.6550
36.0629
2300344231188
100.0000