PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
75751-75800 / 86044 show all
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
70.1173
56.6230
92.0561
70.3396
3892983943420
58.8235
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0352
98.3306
99.7499
54.7881
1755329817552444
9.0909
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
36.9440
68.9906
25.2262
52.0434
66329866919831976
99.6470
gduggal-snapfbSNPtimap_l125_m0_e0homalt
96.3354
93.3645
99.5017
80.4209
419329841932110
47.6190
ghariani-varprowlINDELD1_5HG002complexvarhet
95.4621
98.5649
92.5488
58.7032
204672982040716431130
68.7766
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
79.6057
84.7414
75.0569
26.8642
16552981649548546
99.6350
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
41.4656
31.8078
59.5455
61.4035
1392981318978
87.6404
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.2379
87.4049
99.9050
31.0740
2068298210322
100.0000
hfeng-pmm2SNPtimap_sirenhet
99.5502
99.5223
99.5781
56.1068
620842986207526319
7.2243
jlack-gatkSNPtimap_l100_m0_e0*
96.2565
98.6312
93.9935
77.0428
21473298214701372141
10.2770
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.2885
97.1365
99.4681
47.3280
10109298100985438
70.3704
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6759
93.5657
100.0000
27.8543
4348299439800
hfeng-pmm3SNP*map_l100_m1_e0*
99.6620
99.5870
99.7371
63.4436
721042997209319031
16.3158
gduggal-bwavardSNPtimap_l125_m2_e1homalt
98.6250
97.3905
99.8913
68.5234
1115929911030129
75.0000
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.8799
77.9336
93.1858
52.6802
10562992147157154
98.0892
gduggal-bwafbINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
51.7864
37.7083
82.6389
69.0323
1812991192525
100.0000
gduggal-bwaplatSNPtvHG002compoundhethomalt
94.3411
91.1747
97.7352
50.1035
308929930647167
94.3662
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.4464
92.3899
98.7120
46.6442
363029936024734
72.3404
ckim-dragenSNP*map_l125_m1_e0het
97.7148
98.9469
96.5131
76.8910
2809329928094101588
8.6700
cchapple-customSNP*map_l125_m0_e0homalt
97.7145
95.5453
99.9844
64.7518
6413299641111
100.0000
gduggal-snapplatSNPtvHG002compoundhethomalt
93.1015
91.1747
95.1114
51.4204
30892993074158115
72.7848
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.4252
92.3274
98.7380
54.1740
359829935994639
84.7826
ltrigg-rtg1SNPtimap_l125_m0_e0het
98.0426
96.3815
99.7620
61.0832
79642997964193
15.7895
jli-customSNP*map_l150_m1_e0het
98.8306
98.4521
99.2121
72.9358
190172991901415148
31.7881
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.6090
95.7958
99.4921
26.3939
681329968563534
97.1429
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.8579
98.3570
99.3639
41.8770
1795930017963115109
94.7826
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.9782
96.4324
99.5745
60.1289
810930081903513
37.1429
jli-customSNP*map_l150_m2_e0het
98.8511
98.5099
99.1946
74.6204
198333001983016149
30.4348
jli-customSNP*map_l150_m2_e1het
98.8617
98.5267
99.1989
74.7124
200633002006016249
30.2469
ltrigg-rtg2SNPtimap_l150_m0_e0het
96.9091
94.1142
99.8751
60.5146
4797300479760
0.0000
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
79.1466
70.0599
90.9416
60.7394
7023007637670
92.1053
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
51.6345
52.3810
50.9091
64.2857
330300336324243
75.0000
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
97.4857
98.0964
96.8826
61.5590
1546030016751539278
51.5770
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.5221
95.5960
99.5274
32.5866
651230065293131
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
82.8342
75.6494
91.5271
45.0163
9323009298662
72.0930
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
79.1201
65.5963
99.6683
30.7692
57230060120
0.0000
gduggal-bwafbSNP*map_l100_m0_e0het
98.3117
98.5852
98.0398
73.2020
209053002090641897
23.2057
gduggal-snapvardSNPtvmap_l100_m2_e0homalt
98.2526
96.7441
99.8089
63.7260
891430088811711
64.7059
gduggal-snapfbSNPtimap_l250_m2_e1*
94.5649
94.0898
95.0448
89.7593
47763004776249130
52.2088
gduggal-snapfbSNP*map_l150_m0_e0homalt
95.7170
92.6388
99.0068
86.9094
378830137883812
31.5789
gduggal-snapplatINDELI1_5map_l100_m2_e0*
82.2996
77.9971
87.1046
92.4495
106730110741598
5.0315
ghariani-varprowlSNP*map_l125_m1_e0het
97.3202
98.9398
95.7528
78.2919
28091301280911246234
18.7801
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.3638
94.8948
99.9647
39.6673
5595301565622
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3638
94.8948
99.9647
39.6673
5595301565622
100.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
80.0119
67.3889
98.4536
37.0811
62230157399
100.0000
mlin-fermikitINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
69.6084
54.3247
96.8586
71.6196
3583013701211
91.6667
mlin-fermikitINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
69.6084
54.3247
96.8586
71.6196
3583013701211
91.6667
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.7691
94.9258
98.6854
40.6471
563130156307556
74.6667
qzeng-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
93.8071
88.7770
99.4413
46.0843
238130189054
80.0000
hfeng-pmm3INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3996
94.9310
100.0000
60.6737
5637301567400