PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
75501-75550 / 86044 show all
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.3529
89.7315
95.1320
41.7997
24732832775142134
94.3662
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
98.6542
98.2774
99.0338
56.4448
161462831609315770
44.5860
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_diTR_51to200het
54.9072
42.2449
78.4091
85.8369
2072832075728
49.1228
gduggal-bwaplatINDELD6_15HG002complexvarhetalt
82.3891
72.0632
96.1691
62.5248
7302837282927
93.1034
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
90.1203
82.4985
99.2938
30.7241
133428314061010
100.0000
rpoplin-dv42INDELD1_5HG002complexvar*
99.3660
99.1319
99.6013
57.4494
3243128432474130115
88.4615
gduggal-snapfbSNPtvmap_l125_m0_e0*
95.3719
95.7171
95.0292
79.3444
63472846347332129
38.8554
gduggal-snapvardSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
98.6868
98.3466
99.0294
55.2658
168932841673316441
25.0000
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
70.1659
88.4506
58.1458
66.8417
217528427912009225
11.1996
jpowers-varprowlSNPtimap_l150_m0_e0het
94.9778
94.4281
95.5339
85.9705
4813284481322582
36.4444
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.2361
89.5703
99.4147
34.3662
243928425481514
93.3333
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
67.5729
51.2864
99.0164
50.3257
29928430233
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
51.9933
35.3075
98.5816
45.5598
15528413922
100.0000
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
95.1577
91.3256
99.3255
38.6854
299028482465645
80.3571
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
93.4119
88.3559
99.0817
66.5438
21552842158206
30.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
94.3163
93.0341
95.6344
40.1307
37932844206192187
97.3958
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.6993
0.0000
0.0000
2284000
astatham-gatkINDEL*map_siren*
97.4708
96.1673
98.8100
83.5327
712628471418620
23.2558
cchapple-customSNP*HG002compoundhet*
99.2099
98.9002
99.5216
40.1325
255382842662812897
75.7812
hfeng-pmm2SNP*map_l100_m1_e0het
99.3136
99.3717
99.2555
68.4046
450742854506333828
8.2840
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.4691
95.1249
97.8519
68.0089
55612855512121112
92.5620
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.4691
95.1249
97.8519
68.0089
55612855512121112
92.5620
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2768
95.4919
99.1297
62.3353
603728560375343
81.1321
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2768
95.4919
99.1297
62.3353
603728560375343
81.1321
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
65.6529
54.9051
81.6327
49.3103
3472852405429
53.7037
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.3497
0.0000
0.0000
1285000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.9874
96.4793
99.5434
33.1326
781028578493636
100.0000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.4416
94.4303
96.4748
33.6724
48322854844177175
98.8701
ltrigg-rtg2SNPtvmap_l125_m1_e0het
98.4494
97.1855
99.7466
54.4068
98412859840252
8.0000
ltrigg-rtg2SNPtvmap_l125_m2_e0het
98.4778
97.2706
99.7153
57.2310
1015728510156292
6.8966
ltrigg-rtg2SNPtvmap_l125_m2_e1het
98.4798
97.2993
99.6893
57.3735
1026828510267322
6.2500
ndellapenna-hhgaINDELD6_15*het
92.4134
97.5414
87.7976
56.6240
113072851205916761576
94.0334
ndellapenna-hhgaINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1729
95.2004
99.2289
61.5550
565328556624438
86.3636
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
81.7820
89.5719
75.2387
54.8652
24482852443804793
98.6318
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.0313
89.5336
99.0048
44.4125
243828524872525
100.0000
anovak-vgSNPtvmap_l250_m2_e0homalt
81.7550
69.5838
99.0868
89.1941
65228565164
66.6667
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
55.3043
53.2020
57.5796
52.8812
324285452333230
69.0691
astatham-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.3926
98.2240
98.5619
60.1500
1576228515763230217
94.3478
ckim-isaacINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6555
81.5055
88.0587
71.2392
1256285126117187
50.8772
eyeh-varpipeSNP*map_siren*
98.7590
99.8051
97.7347
59.1101
145943285141168327281
2.4756
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
86.6522
77.1817
98.7718
69.3057
9642859651210
83.3333
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
86.6522
77.1817
98.7718
69.3057
9642859651210
83.3333
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
67.6237
92.1660
53.4032
48.7367
3353285341329782941
98.7576
gduggal-bwavardSNP*map_l150_m2_e0homalt
98.6803
97.5639
99.8226
73.2845
11414285112512015
75.0000
hfeng-pmm3SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1505
98.3978
99.9147
54.8907
1756528617565154
26.6667
hfeng-pmm1SNPtimap_l100_m2_e0het
99.3987
99.0660
99.7336
64.8032
30336286303298120
24.6914
hfeng-pmm1SNPtimap_l100_m2_e1het
99.4037
99.0762
99.7333
64.8020
30674286306678220
24.3902
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
94.0067
0.0000
0.0000
4486286000
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0286000
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
63.3305
56.2021
72.5296
71.5411
367286367139118
84.8921