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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
75451-75500 / 86044 show all
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.7955
92.0590
99.8481
42.7080
3246280328754
80.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_diTR_11to50*
98.4982
97.1110
99.9257
65.7528
9412280941276
85.7143
hfeng-pmm1SNP*map_l150_m2_e1*
99.3543
99.1307
99.5789
75.1677
319302803192413537
27.4074
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
68.1056
52.0548
98.4674
26.8908
30428025744
100.0000
jpowers-varprowlSNPtvmap_l150_m1_e0het
95.7277
95.9689
95.4878
82.3230
6666280666631575
23.8095
ltrigg-rtg2INDEL*HG002complexvarhomalt
99.4106
98.9640
99.8613
51.7784
26746280266313727
72.9730
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
63.5445
60.9484
66.3717
63.9745
437280450228159
69.7368
astatham-gatkINDELD1_5*het
99.6974
99.6803
99.7145
58.9760
8729428087301250122
48.8000
asubramanian-gatkINDEL*map_l125_m1_e0*
91.1206
86.6635
96.0609
96.9394
18262811829758
10.6667
hfeng-pmm1SNPtimap_l100_m1_e0het
99.3951
99.0615
99.7309
63.4093
29661281296548020
25.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
77.9566
64.5649
98.3573
34.9800
51228147984
50.0000
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
87.1624
85.4630
88.9307
63.9481
16522811655206205
99.5146
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
80.9237
76.2066
86.2632
43.6078
900281898143143
100.0000
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
81.1064
76.2066
86.6795
41.5020
900281898138138
100.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
66.7149
82.5790
55.9638
44.4510
1332281581845784118
89.9519
gduggal-bwaplatINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
63.8458
46.9811
99.5984
65.4167
24928124811
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
70.3339
57.7444
89.9436
58.0772
384281957107104
97.1963
gduggal-bwavardSNP*map_l125_m0_e0het
91.2008
97.7811
85.4502
85.0594
1238328112251208687
4.1707
gduggal-bwavardSNPtimap_l150_m1_e0het
93.4529
97.7284
89.5358
84.8427
1208928111996140282
5.8488
jpowers-varprowlINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
63.5897
56.9678
71.9536
70.5077
372281372145129
88.9655
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.6538
97.4644
97.8440
54.1303
1080128110801238235
98.7395
ckim-isaacINDELD1_5map_l150_m2_e0*
76.9968
63.1717
98.5685
90.5306
48228148273
42.8571
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.5107
97.2293
99.8263
49.4968
989628297681717
100.0000
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
87.0329
79.1574
96.6486
67.1233
107128210673732
86.4865
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
66.3114
62.9921
70.0000
83.0785
48028258124922
8.8353
ghariani-varprowlSNPtimap_l100_m1_e0het
98.1681
99.0582
97.2939
72.4309
2966028229662825157
19.0303
gduggal-snapvardINDELD16_PLUSHG002complexvarhomalt
4.7297
2.4221
100.0000
77.7778
7282800
ndellapenna-hhgaINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
94.5857
90.9615
98.5106
44.8835
283828228444339
90.6977
qzeng-customINDELI1_5map_l125_m2_e1*
79.7441
67.5862
97.2356
91.0364
5882828092311
47.8261
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
33.1255
25.5937
46.9388
67.3333
9728211513084
64.6154
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.1492
98.5802
99.7249
57.4159
19580282195735432
59.2593
hfeng-pmm3INDELD6_15*het
98.2130
97.5673
98.8673
58.6531
1131028211260129115
89.1473
raldana-dualsentieonINDELD6_15HG002complexvar*
96.9018
94.6813
99.2289
57.2443
502028250193937
94.8718
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
97.3823
95.0803
99.7986
57.9620
54502825451119
81.8182
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9914
97.4553
98.5335
44.4822
1080028211758175165
94.2857
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
87.0684
79.1574
96.7362
66.6465
107128210673634
94.4444
jmaeng-gatkINDEL*HG002complexvarhet
99.5676
99.3876
99.7482
58.0104
459292834556011573
63.4783
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4779
95.9039
99.1043
49.4530
662628366396051
85.0000
hfeng-pmm2INDELD6_15HG002complexvar*
96.9573
94.6624
99.3663
56.8597
501928350183226
81.2500
qzeng-customINDELI16_PLUS*het
85.2063
89.5879
81.2333
62.0542
24352832740633156
24.6445
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
81.2517
69.3391
98.1067
37.6609
6402835701110
90.9091
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.9399
93.0416
99.0245
57.0442
378428337563732
86.4865
ckim-isaacSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
96.6143
93.9646
99.4178
33.0736
44062834440265
19.2308
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
73.2107
79.5963
67.7737
81.2197
110428311025244
0.7634
hfeng-pmm1INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1710
92.9950
95.3770
77.2463
37572833466168128
76.1905
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
90.6695
93.1741
88.2960
82.0927
38632834021533266
49.9062
asubramanian-gatkSNPtvsegdup*
97.9981
96.6831
99.3493
93.1884
82492838245546
11.1111
cchapple-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
95.8456
0.0000
0.0000
6529283000