PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
75351-75400 / 86044 show all
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
4.1958
0.0000
0.0000
12274000
asubramanian-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.2419
94.8438
97.6819
61.2333
50402746110145131
90.3448
jlack-gatkSNP*map_l125_m2_e0het
94.4864
99.0654
90.3119
83.7916
29044274290383115221
7.0947
jlack-gatkSNP*map_l125_m2_e1het
94.5222
99.0756
90.3690
83.8291
29366274293603129222
7.0949
ghariani-varprowlSNP*map_l100_m1_e0homalt
99.3219
98.9853
99.6607
61.9023
26729274267299164
70.3297
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
62.6517
96.2893
46.4314
47.0193
7110274714382418121
98.5439
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
32.1716
22.5989
55.8140
74.4554
8027472576
10.5263
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
49.3741
54.9918
44.7978
36.5595
3362758311024846
82.6172
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
53.6664
37.9233
91.7582
47.7011
1682751671513
86.6667
ghariani-varprowlSNP*map_l100_m2_e0homalt
99.3166
99.0008
99.6343
64.4739
272482752724810067
67.0000
eyeh-varpipeSNPtvHG002complexvar*
99.7847
99.8883
99.6813
20.5762
245880275235205752120
15.9574
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
70.1122
60.5452
83.2700
54.5769
4222754388886
97.7273
gduggal-bwafbSNP*map_sirenhomalt
99.7102
99.5014
99.9199
54.2074
54881275548814425
56.8182
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.5183
78.0351
99.6251
29.7101
977275106344
100.0000
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.2724
97.0924
97.4530
45.0586
91832759183240235
97.9167
qzeng-customINDELD6_15HG002complexvar*
93.7910
94.8133
92.7906
55.1605
50272755277410156
38.0488
ltrigg-rtg2SNPtvmap_l100_m0_e0*
98.6223
97.5189
99.7508
54.0500
1080927510808272
7.4074
ckim-vqsrINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.7063
95.9630
99.5141
33.0555
653727565543232
100.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.5183
78.0351
99.6251
29.7101
977275106344
100.0000
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9205
98.2346
99.6161
72.9579
15302275153095945
76.2712
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.4366
98.2863
98.5874
60.3465
1577227515773226212
93.8053
hfeng-pmm1SNP*map_l150_m1_e0*
99.3336
99.1016
99.5666
73.6726
303342753032813237
28.0303
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.3952
89.8785
99.3897
87.2026
24422752443153
20.0000
asubramanian-gatkINDELI1_5*homalt
99.5606
99.5449
99.5763
55.0778
6015327560163256247
96.4844
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8288
92.9433
96.7925
52.5751
36222754617153140
91.5033
anovak-vgINDELD1_5map_l100_m2_e0*
84.6007
85.6397
83.5866
84.4811
16402751650324122
37.6543
anovak-vgINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
1.4337
0.0000
0.0000
4275000
astatham-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.9904
93.0008
95.0013
54.6571
36542753649192181
94.2708
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.2600
94.9290
95.5934
73.1707
51482755163238158
66.3866
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2600
94.9290
95.5934
73.1707
51482755163238158
66.3866
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.4680
77.9553
99.6251
31.2943
976276106344
100.0000
ltrigg-rtg2SNPtvmap_l150_m1_e0*
98.6367
97.4707
99.8310
62.1132
1063627610635182
11.1111
mlin-fermikitINDELI1_5map_l100_m0_e0*
62.6026
49.1713
86.1290
76.1722
2672762674336
83.7209
mlin-fermikitINDELI1_5map_l150_m2_e0*
61.4412
46.8208
89.3382
85.2734
2432762432925
86.2069
gduggal-bwafbSNPtimap_l150_m1_e0*
98.7276
98.5998
98.8556
76.3349
194362761943622569
30.6667
rpoplin-dv42INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
88.9263
93.1683
85.0537
75.7901
37642763642640581
90.7813
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.2891
92.0962
98.7113
50.7555
321627632174236
85.7143
ghariani-varprowlINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
85.8876
95.4769
78.0488
76.6109
5826276585616471442
87.5531
ghariani-varprowlSNP*map_l100_m2_e1homalt
99.3161
99.0071
99.6271
64.4501
275202762752010368
66.0194
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
75.7559
79.7506
72.1424
75.3616
10872761155446264
59.1928
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
66.8725
51.0638
96.8586
35.5002
28827614804847
97.9167
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
53.4400
37.6975
91.7582
47.5504
1672761671513
86.6667
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.9360
95.2617
96.6200
68.1344
55692775517193187
96.8912
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.9360
95.2617
96.6200
68.1344
55692775517193187
96.8912
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
73.3639
62.2101
89.3910
71.1778
4562774555430
55.5556
gduggal-bwavardINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.7168
0.0000
0.0000
2277000
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
87.7124
80.0288
97.0280
79.4096
11102771110344
11.7647
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
40.0433
0.0000
0.0000
185277000
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8999
98.0990
99.7140
75.1504
14294277142944113
31.7073
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.8999
98.0990
99.7140
75.1504
14294277142944113
31.7073