PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
75251-75300 / 86044 show all
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6217
99.0631
98.1843
79.0142
284432692844352629
5.5133
jli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.7391
98.3237
99.1580
56.4704
1577826915780134125
93.2836
gduggal-bwavardINDEL*map_l100_m2_e1*
90.3682
92.8381
88.0262
88.0620
34872693492475199
41.8947
gduggal-bwavardINDELD6_15HG002complexvarhomalt
86.1695
76.9889
97.8360
44.7799
9002698591914
73.6842
gduggal-bwaplatINDEL*segdup*
94.1537
89.4757
99.3478
96.2604
22872692285159
60.0000
ciseli-customSNPtvmap_l250_m0_e0het
59.1512
52.9720
66.9623
96.1499
3032693021497
4.6980
ckim-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.0854
93.2480
96.9966
62.0553
37152693714115105
91.3043
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.7674
88.8428
97.0548
55.8776
214226921426563
96.9231
rpoplin-dv42SNPtimap_l125_m1_e0*
99.2894
99.0830
99.4967
68.8733
2906626929062147101
68.7075
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.5959
95.4653
99.8237
48.8181
56632695663108
80.0000
jlack-gatkSNPtimap_l150_m1_e0*
96.1043
98.6353
93.7000
82.0564
19443269194391307125
9.5639
hfeng-pmm1SNP*lowcmp_SimpleRepeat_diTR_11to50het
97.7476
95.6863
99.8995
66.9763
5967269596765
83.3333
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.2201
98.6457
99.8013
56.9126
19593269195863921
53.8462
jlack-gatkINDELI16_PLUSHG002compoundhethetalt
93.0151
87.1476
99.7297
45.3148
1824269184554
80.0000
jlack-gatkINDELI16_PLUS*hetalt
92.9357
87.1306
99.5697
57.5280
1828270185187
87.5000
jlack-gatkSNPtimap_sirenhomalt
99.6031
99.2879
99.9204
49.0602
37646270376403020
66.6667
hfeng-pmm3SNPtimap_sirenhet
99.6838
99.5672
99.8007
53.2950
621122706210312411
8.8710
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.5883
90.0626
99.5930
87.0976
24472702447104
40.0000
jli-customSNP**homalt
99.9850
99.9771
99.9928
17.2570
117989127011798758566
77.6471
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50het
79.4844
92.6189
69.6125
45.3619
3388270339514821473
99.3927
jpowers-varprowlSNP*map_l100_m2_e1homalt
99.3431
99.0286
99.6597
66.2636
27526270275269469
73.4043
qzeng-customINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
79.7708
76.3365
83.5286
61.7313
8712702282450243
54.0000
mlin-fermikitINDELI1_5map_l150_m1_e0*
61.2987
46.6403
89.3939
82.1138
2362702362825
89.2857
anovak-vgSNPtvmap_l250_m2_e1het
71.4817
86.2595
61.0268
91.9453
169527016881078256
23.7477
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2443
95.7292
98.8082
63.2331
605227060527363
86.3014
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2443
95.7292
98.8082
63.2331
605227060527363
86.3014
cchapple-customINDEL**homalt
99.5578
99.7843
99.3323
55.6558
124902270124673838810
96.6587
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
96.7120
95.2896
98.1776
52.4952
54622707542140133
95.0000
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
0270000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
0270000
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
42.7574
27.8075
92.4731
71.5596
1042708672
28.5714
gduggal-snapplatSNPtvmap_l150_m0_e0homalt
88.6840
79.6687
100.0000
81.7822
1058270105900
ghariani-varprowlINDEL*map_l100_m2_e0*
90.4686
92.6889
88.3523
92.4226
34232703421451206
45.6763
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
69.8249
55.6650
93.6464
87.2714
3392703392317
73.9130
gduggal-bwafbINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
88.7546
84.9330
92.9364
52.1776
15222701592121119
98.3471
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
63.9411
49.6269
89.8601
54.0931
2662702572929
100.0000
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
88.7545
83.2610
95.0242
30.5643
13432706092319295
92.4765
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
71.6109
63.4771
82.1356
31.7350
4712712023440436
99.0909
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
80.5396
78.3026
82.9082
65.7841
978271975201201
100.0000
gduggal-bwafbINDELD16_PLUS*homalt
85.6946
83.9835
87.4769
60.7791
14212711418203203
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
80.5396
78.3026
82.9082
65.7841
978271975201201
100.0000
qzeng-customINDEL*map_l100_m2_e1homalt
85.5777
78.8447
93.5680
81.7812
101027113829515
15.7895
jlack-gatkSNP*map_l125_m1_e0het
94.3869
99.0455
90.1469
82.7150
28121271281153073220
7.1591
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
84.3708
77.0533
93.2238
41.8507
9102719086666
100.0000
hfeng-pmm1INDELD6_15HG002complexvar*
97.1047
94.8887
99.4267
56.6618
503127150292925
86.2069
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.4345
88.7599
98.6289
56.3012
214027121583018
60.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.0265
98.4792
97.5780
71.1859
1754827117163426391
91.7840
egarrison-hhgaSNPtimap_l125_m2_e1*
99.4698
99.1135
99.8287
70.7805
30298271302985224
46.1538
ckim-vqsrINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.0829
93.1978
97.0458
62.0799
37132713712113105
92.9204
ckim-isaacINDELD1_5map_l100_m0_e0*
80.7640
68.5979
98.1758
85.4699
592271592114
36.3636