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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
74651-74700 / 86044 show all
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.6757
94.4354
99.0249
47.4574
405623940624013
32.5000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
81.8034
73.8226
91.7189
86.0200
674239731668
12.1212
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.7466
91.9826
97.6819
48.8321
274223927396551
78.4615
astatham-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3009
98.6611
99.9489
57.4118
176122391761192
22.2222
asubramanian-gatkINDEL*map_l125_m2_e1het
88.1973
83.0256
94.0562
92.2786
11692391171747
9.4595
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_11to50het
95.4770
96.4561
94.5176
45.8743
65052396603383170
44.3864
ciseli-customINDELD1_5map_l125_m2_e0het
75.0226
68.7173
82.6019
92.3012
52523952711123
20.7207
ciseli-customINDELI6_15map_siren*
31.6781
21.6393
59.0909
84.5070
66239654541
91.1111
ciseli-customINDELD1_5map_l125_m2_e1het
75.0932
68.8312
82.6087
92.3470
53024053211224
21.4286
ckim-gatkSNPtimap_l250_m0_e0homalt
62.0253
44.9541
100.0000
95.9004
19624019600
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
74.0439
75.2066
72.9167
67.8332
728240630234184
78.6325
ltrigg-rtg1SNP*HG002compoundhethomalt
98.8047
97.7741
99.8572
33.1849
1054224010491158
53.3333
eyeh-varpipeINDELI6_15HG002complexvarhomalt
78.9714
80.2306
77.7510
38.7303
974240968277275
99.2780
gduggal-bwafbSNPtimap_l125_m1_e0het
98.5889
98.6861
98.4920
74.2606
180262401802627677
27.8986
gduggal-bwaplatINDELI1_5map_l100_m0_e0*
71.3781
55.8011
99.0196
94.2286
30324030331
33.3333
gduggal-bwavardSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.7481
97.6242
99.8981
43.0461
98622409806109
90.0000
gduggal-bwavardSNPtvsegdup*
98.0164
97.1871
98.8601
94.3820
829224082399534
35.7895
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
11.3424
10.7807
11.9658
93.0543
292402820615
7.2816
ndellapenna-hhgaSNPtvmap_l125_m2_e1*
99.1365
98.5592
99.7206
69.3660
16417240164174622
47.8261
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
93.0148
97.6827
88.7726
47.1861
101172401009712771255
98.2772
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
84.0483
87.8234
80.5844
69.4588
17312401710412408
99.0291
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
84.0483
87.8234
80.5844
69.4588
17312401710412408
99.0291
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
86.8526
95.8946
79.3688
62.7255
5606240636316541576
95.2842
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.8526
95.8946
79.3688
62.7255
5606240636316541576
95.2842
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.4610
97.3722
99.5745
76.8854
889324088933810
26.3158
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.4610
97.3722
99.5745
76.8854
889324088933810
26.3158
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.6664
95.9541
99.4410
50.6296
569224056923230
93.7500
bgallagher-sentieonSNPtv*het
99.8318
99.9594
99.7045
23.0898
591456240591385175353
3.0234
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.4148
85.9485
99.9334
29.8926
1468240150011
100.0000
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4527
93.8414
99.2135
55.2222
365724036582924
82.7586
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.3376
93.0985
97.6870
52.9536
325124132527770
90.9091
ghariani-varprowlINDELI6_15HG002complexvarhomalt
84.4108
80.1483
89.1522
51.9071
97324197811999
83.1933
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
87.7327
97.7687
79.5653
85.1430
10560241106532736243
8.8816
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.3167
94.8139
99.9552
24.2743
4406241445922
100.0000
jpowers-varprowlINDEL*map_sirenhet
92.1013
94.6539
89.6827
84.2292
42672414268491415
84.5214
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9982
90.5081
99.9572
32.8251
2298241233411
100.0000
cchapple-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
86.7728
0.0000
0.0000
1581241000
ckim-dragenSNPtvmap_siren*
98.9465
99.4753
98.4233
61.5086
456892414569473269
9.4262
gduggal-bwavardSNPtilowcmp_SimpleRepeat_diTR_11to50*
94.8869
95.0176
94.7566
72.8903
45962414554252104
41.2698
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
23.7730
13.6201
93.3884
56.4748
3824111388
100.0000
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
94.2517
90.5267
98.2964
70.3273
23032412308407
17.5000
bgallagher-sentieonSNPtiHG002complexvarhet
99.9477
99.9234
99.9720
16.9632
3145252413144718829
32.9545
ndellapenna-hhgaSNP*map_l250_m1_e0*
98.0684
96.6630
99.5153
86.9145
698124169813419
55.8824
ltrigg-rtg2SNPtimap_l250_m2_e1het
96.1485
92.6948
99.8695
77.1012
3058241306141
25.0000
mlin-fermikitINDEL*map_l125_m1_e0homalt
70.9025
67.0765
75.1914
80.2241
491241491162142
87.6543
mlin-fermikitINDELD1_5map_l125_m0_e0*
63.8147
51.4113
84.1060
79.6633
2552412544841
85.4167
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
76.1905
62.8659
96.6825
50.9872
4082414081413
92.8571
dgrover-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.3859
89.8140
99.4483
30.8646
212524121631211
91.6667
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4365
97.1073
54.0383
40.3757
81242421174999939948
99.5497
dgrover-gatkSNP*map_l100_m1_e0het
99.3755
99.4665
99.2846
70.4056
451172424510632562
19.0769