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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
74501-74550 / 86044 show all
ghariani-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50het
88.8712
96.2797
82.5214
76.5304
60042326081128813
1.0093
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
83.1975
80.3556
86.2477
45.5627
949232947151143
94.7020
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
96.5808
93.9028
99.4161
29.0155
357323240862423
95.8333
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
82.7974
80.3556
85.3922
44.8533
949232947162161
99.3827
raldana-dualsentieonINDELI16_PLUSHG002compoundhet*
92.4081
89.1741
95.8856
50.9476
191123219118281
98.7805
rpoplin-dv42INDELI6_15HG002complexvar*
96.7965
95.1586
98.4917
56.6586
456023245717064
91.4286
rpoplin-dv42SNP*map_l150_m1_e0het
98.8884
98.7989
98.9780
74.2870
1908423219078197116
58.8832
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.0672
96.6017
99.5778
24.0929
659523266042827
96.4286
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
85.5631
82.9787
88.3137
74.1798
11312321126149144
96.6443
egarrison-hhgaSNPtimap_l125_m1_e0het
99.2515
98.7299
99.7787
70.5410
18034232180344016
40.0000
ckim-isaacSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1078
92.3077
95.9796
65.5314
278423228171187
5.9322
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.5842
93.4203
99.9700
43.5033
3294232333411
100.0000
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.5842
93.4203
99.9700
43.5033
3294232333411
100.0000
hfeng-pmm1SNPtimap_l125_m1_e0*
99.4515
99.2091
99.6951
68.8149
29103232290998925
28.0899
hfeng-pmm2INDELD6_15HG002complexvarhet
95.8142
92.5641
99.3009
57.1386
288823228412016
80.0000
jlack-gatkSNPtimap_l100_m2_e0het
96.4036
99.2424
93.7226
78.7202
30390232303832035176
8.6487
jlack-gatkSNPtimap_l100_m2_e1het
96.4266
99.2506
93.7588
78.7315
30728232307212045177
8.6553
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
97.7311
98.5279
96.9471
62.1515
1552823215370484412
85.1240
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.4186
95.3591
95.4783
74.6523
47672324751225163
72.4444
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.4186
95.3591
95.4783
74.6523
47672324751225163
72.4444
jlack-gatkINDELD1_5HG002complexvar*
99.4067
99.2878
99.5259
58.0276
324822333253915592
59.3548
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5604
97.4488
99.6975
72.9214
89002338900275
18.5185
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5604
97.4488
99.6975
72.9214
89002338900275
18.5185
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.1692
87.2119
100.0000
32.0201
1589233162200
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.2527
96.5796
99.9848
34.0696
6579233659610
0.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
78.5775
66.5710
95.8678
49.7925
4642334642018
90.0000
jlack-gatkSNP*map_l150_m0_e0*
93.9698
98.0635
90.2042
86.8496
11799233117961281106
8.2748
astatham-gatkSNPtiHG002compoundhet*
99.2746
98.6669
99.8899
35.7263
17245233172431918
94.7368
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.6051
97.9373
87.8236
56.1886
110632331146815901468
92.3270
asubramanian-gatkINDELD1_5map_sirenhet
93.3358
89.7672
97.1998
84.8319
20442332048595
8.4746
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0298
86.3583
98.4987
30.6787
147523315092322
95.6522
ciseli-customINDEL*map_sirenhetalt
0.0000
5.6680
0.0000
0.0000
14233000
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
82.6739
80.2710
85.2252
43.8259
948233946164164
100.0000
gduggal-bwavardSNPtimap_l150_m0_e0*
92.8160
97.0360
88.9477
85.9871
7628233756594050
5.3192
gduggal-bwafbSNP*map_l150_m0_e0*
98.2636
98.0635
98.4645
81.5621
117992331179918458
31.5217
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
73.1236
61.8658
89.3899
45.9110
3782333374035
87.5000
eyeh-varpipeSNPti*homalt
99.9720
99.9710
99.9731
16.3629
80280623379029721389
41.7840
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
80.6406
68.2128
98.6056
59.6463
50023349576
85.7143
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7424
96.3145
99.2132
57.7581
608923360534828
58.3333
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7424
96.3145
99.2132
57.7581
608923360534828
58.3333
ltrigg-rtg2SNPtvmap_l125_m0_e0*
98.1288
96.4862
99.8283
59.5773
63982336396110
0.0000
mlin-fermikitINDELD16_PLUS*het
88.5250
92.6242
84.7733
71.4486
29262332767497415
83.5010
gduggal-snapvardSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
95.5819
93.2562
98.0265
65.1478
322223331796422
34.3750
gduggal-snapvardSNPtilowcmp_SimpleRepeat_quadTR_11to50*
90.8579
97.8289
84.8143
63.2556
1049923310461187364
3.4170
gduggal-snapplatINDELD1_5map_l100_m2_e1het
85.1359
81.6246
88.9630
91.9002
1035233120114928
18.7919
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1499
97.8975
98.4036
52.7453
1084923310849176172
97.7273
jpowers-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50*
95.1147
97.5960
92.7564
74.4795
94592339540745245
32.8859
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.9241
87.1570
99.5086
30.3082
1588234162088
100.0000
ltrigg-rtg2SNPtimap_l250_m1_e0het
95.8290
92.1159
99.8541
75.2192
2734234273741
25.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
82.5967
81.0065
84.2506
51.7959
998234995186167
89.7849