PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74451-74500 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | het | 98.7191 | 97.7974 | 99.6584 | 61.3796 | 10212 | 230 | 10211 | 35 | 5 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | het | 98.7185 | 97.8205 | 99.6332 | 61.5213 | 10323 | 230 | 10322 | 38 | 5 | 13.1579 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6474 | 95.7705 | 99.5993 | 26.2869 | 5208 | 230 | 5220 | 21 | 21 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.6086 | 96.6584 | 94.5813 | 87.2366 | 6653 | 230 | 6720 | 385 | 17 | 4.4156 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | * | 69.6335 | 53.6290 | 99.2537 | 95.9184 | 266 | 230 | 266 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.3785 | 91.3011 | 99.8371 | 36.7431 | 2414 | 230 | 2451 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | ti | map_l100_m1_e0 | het | 96.3792 | 99.2318 | 93.6859 | 77.4968 | 29712 | 230 | 29705 | 2002 | 175 | 8.7413 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.7544 | 73.6239 | 99.8498 | 26.3274 | 642 | 230 | 665 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 230 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 70.8362 | 61.8574 | 82.8641 | 49.8157 | 373 | 230 | 677 | 140 | 133 | 95.0000 | |
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 230 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | homalt | 97.8112 | 96.1775 | 99.5014 | 78.2474 | 5787 | 230 | 5787 | 29 | 7 | 24.1379 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | homalt | 97.8321 | 96.2134 | 99.5062 | 78.2651 | 5844 | 230 | 5844 | 29 | 7 | 24.1379 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 230 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 19.4706 | 14.4444 | 29.8611 | 63.4518 | 39 | 231 | 43 | 101 | 70 | 69.3069 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.1109 | 83.2972 | 98.1387 | 67.3931 | 1152 | 231 | 1160 | 22 | 6 | 27.2727 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e0 | het | 79.5780 | 74.5033 | 85.3946 | 95.3000 | 675 | 231 | 725 | 124 | 19 | 15.3226 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 26.8987 | 0.0000 | 0.0000 | 85 | 231 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5714 | 93.4487 | 99.9101 | 42.6066 | 3295 | 231 | 3335 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5714 | 93.4487 | 99.9101 | 42.6066 | 3295 | 231 | 3335 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | * | * | 96.9778 | 96.5949 | 97.3637 | 71.3383 | 6553 | 231 | 6537 | 177 | 130 | 73.4463 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4729 | 99.1955 | 97.7608 | 76.5892 | 28481 | 231 | 28728 | 658 | 53 | 8.0547 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.4729 | 99.1955 | 97.7608 | 76.5892 | 28481 | 231 | 28728 | 658 | 53 | 8.0547 | |
| ckim-dragen | SNP | ti | HG002complexvar | het | 99.9189 | 99.9266 | 99.9111 | 17.5776 | 314535 | 231 | 314661 | 280 | 125 | 44.6429 | |
| cchapple-custom | SNP | tv | map_l125_m0_e0 | * | 95.8633 | 96.5164 | 95.2189 | 78.5014 | 6400 | 231 | 6393 | 321 | 56 | 17.4455 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 69.6749 | 94.4284 | 55.2038 | 82.9047 | 3915 | 231 | 3941 | 3198 | 130 | 4.0650 | |
| ckim-isaac | INDEL | * | map_l150_m2_e1 | homalt | 69.0476 | 53.0488 | 98.8636 | 85.5104 | 261 | 231 | 261 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | het | 81.4607 | 94.3576 | 71.6654 | 76.0047 | 3863 | 231 | 3804 | 1504 | 1483 | 98.6037 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 74.4494 | 60.3774 | 97.0745 | 67.4459 | 352 | 231 | 365 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.7444 | 68.4857 | 84.7242 | 61.9892 | 502 | 231 | 599 | 108 | 100 | 92.5926 | |
| hfeng-pmm1 | SNP | * | map_l100_m0_e0 | het | 99.2124 | 98.9106 | 99.5159 | 69.6159 | 20974 | 231 | 20970 | 102 | 27 | 26.4706 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.6527 | 80.4403 | 87.1324 | 45.1060 | 950 | 231 | 948 | 140 | 140 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.3724 | 94.0724 | 98.7877 | 56.0658 | 3666 | 231 | 3667 | 45 | 39 | 86.6667 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5600 | 99.5848 | 99.5352 | 55.2358 | 55400 | 231 | 55463 | 259 | 19 | 7.3359 | |
| eyeh-varpipe | SNP | * | HG002compoundhet | * | 97.2195 | 99.1054 | 95.4041 | 44.2893 | 25591 | 231 | 16939 | 816 | 176 | 21.5686 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.8584 | 0.0000 | 0.0000 | 2 | 231 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.1219 | 73.6301 | 98.1006 | 47.7187 | 645 | 231 | 1911 | 37 | 37 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 80.7110 | 78.7684 | 82.7519 | 62.8376 | 857 | 231 | 854 | 178 | 178 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7922 | 62.5000 | 93.1034 | 51.7203 | 385 | 231 | 405 | 30 | 30 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.0929 | 83.6170 | 95.3363 | 63.5012 | 1179 | 231 | 1942 | 95 | 38 | 40.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 54.4885 | 52.9412 | 56.1290 | 51.1555 | 261 | 232 | 261 | 204 | 201 | 98.5294 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 65.8938 | 49.7835 | 97.4194 | 62.0098 | 230 | 232 | 302 | 8 | 8 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2461 | 13.7546 | 75.0000 | 92.9078 | 37 | 232 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | * | 94.1240 | 97.9830 | 90.5575 | 83.2923 | 11270 | 232 | 11240 | 1172 | 51 | 4.3515 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 77.1048 | 63.8066 | 97.4057 | 47.3945 | 409 | 232 | 413 | 11 | 11 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 6.0729 | 0.0000 | 0.0000 | 15 | 232 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 17.0866 | 13.7546 | 22.5490 | 86.7704 | 37 | 232 | 23 | 79 | 9 | 11.3924 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 72.5851 | 97.6063 | 57.7747 | 75.1406 | 9460 | 232 | 9679 | 7074 | 284 | 4.0147 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 78.3315 | 84.6966 | 72.8563 | 89.5793 | 1284 | 232 | 1283 | 478 | 11 | 2.3013 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.6501 | 74.6171 | 72.7079 | 81.2886 | 682 | 232 | 682 | 256 | 1 | 0.3906 | |