PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
74251-74300 / 86044 show all
raldana-dualsentieonINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.7835
87.9479
98.1818
64.9979
162022216203027
90.0000
bgallagher-sentieonSNPtimap_l100_m2_e0*
99.4612
99.5466
99.3760
66.3096
487392224873230650
16.3399
astatham-gatkSNPtiHG002compoundhethet
98.7553
97.6644
99.8709
39.9910
928322292811211
91.6667
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.8537
97.8565
99.8715
37.6633
10135222101031313
100.0000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
86.2358
92.6000
80.6901
73.5018
27782222783666652
97.8979
jpowers-varprowlINDEL*map_sirenhomalt
94.9463
91.6384
98.5020
74.3563
243322224333725
67.5676
jpowers-varprowlINDELD1_5map_siren*
94.5668
93.7093
95.4401
81.4755
33072223307158114
72.1519
jpowers-varprowlSNP*segdup*
98.1671
99.2090
97.1467
91.9113
278452222785181871
8.6797
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.6052
94.2754
99.0530
53.1678
365622236613517
48.5714
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.7084
94.4652
99.0608
42.7483
378922237973612
33.3333
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
84.2675
79.8913
89.1509
81.5972
88222294511566
57.3913
gduggal-bwaplatINDELI1_5map_l100_m2_e1homalt
74.0396
58.8889
99.6865
89.4161
31822231811
100.0000
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
46.1240
34.8974
68.0000
71.9101
1192221788
100.0000
jlack-gatkSNP*map_l150_m2_e0het
93.6840
98.8973
88.9927
86.5727
19911222199052462176
7.1487
jlack-gatkSNP*map_l150_m2_e1het
93.7014
98.9098
89.0141
86.6201
20141222201352485178
7.1630
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
68.8811
63.9610
74.6212
70.9571
394222394134130
97.0149
qzeng-customINDELI1_5map_l100_m2_e0het
80.9908
72.0050
92.5390
89.7242
5712228316713
19.4030
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
76.8434
94.7617
64.6239
86.6785
40162223986218261
2.7956
ghariani-varprowlSNP*map_l100_m0_e0homalt
98.8809
98.0895
99.6851
64.3445
11398222113983621
58.3333
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
81.6587
97.5693
70.2096
85.8214
89112228977380926
0.6826
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
81.6587
97.5693
70.2096
85.8214
89112228977380926
0.6826
ckim-dragenSNPtimap_l100_m0_e0*
98.3169
98.9803
97.6623
69.9393
215492222155751660
11.6279
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.3696
99.2268
97.5271
78.9884
284902222863272657
7.8512
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.3696
99.2268
97.5271
78.9884
284902222863272657
7.8512
ciseli-customINDEL*map_l150_m0_e0*
63.1351
56.8093
71.0462
94.9719
29222229211960
50.4202
cchapple-customSNPtvmap_l100_m2_e1homalt
98.7868
97.6027
100.0000
60.2358
9079223907300
gduggal-bwafbSNP*map_l125_m0_e0het
98.0108
98.2391
97.7835
78.4484
124412231244128270
24.8227
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
65.8537
49.2027
99.5392
51.5625
21622321611
100.0000
gduggal-bwaplatSNPtisegduphet
98.4906
98.1463
98.8374
94.7165
11807223118171396
4.3166
jpowers-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50het
95.5170
96.4240
94.6270
76.4781
6013223607634514
4.0580
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.5003
95.5391
97.4811
71.7827
47762234760123101
82.1138
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.5003
95.5391
97.4811
71.7827
47762234760123101
82.1138
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
85.1178
74.4266
99.3958
24.0826
64922365844
100.0000
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.7600
86.9438
99.4102
29.9035
1485223151798
88.8889
bgallagher-sentieonSNP*map_l100_m1_e0het
99.2217
99.5084
98.9366
68.7750
451362234512548563
12.9897
bgallagher-sentieonSNPtimap_l100_m2_e1*
99.4649
99.5494
99.3806
66.3075
492622234925530750
16.2866
anovak-vgSNPtvlowcmp_SimpleRepeat_diTR_11to50*
93.6443
95.4077
91.9449
64.3247
46332234874427230
53.8642
egarrison-hhgaINDELD16_PLUS*het
92.0708
92.9408
91.2170
67.2524
29362233043293261
89.0785
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4424
99.5121
99.3729
70.5814
454792234547928731
10.8014
ckim-isaacINDELD1_5map_l125_m2_e0het
82.3461
70.8115
98.3696
88.9842
54122354393
33.3333
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
89.1325
94.2362
84.5533
48.1916
36462233246593548
92.4115
gduggal-snapvardSNPtvmap_l125_m2_e1homalt
98.0309
96.3286
99.7943
68.8883
58512235823129
75.0000
ghariani-varprowlINDEL*map_sirenhomalt
94.2088
91.6008
96.9697
74.6820
243222324327625
32.8947
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
64.2160
51.7316
84.6429
72.1670
2392232374341
95.3488
gduggal-snapplatSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
83.5589
88.9822
78.7587
90.6848
1801223180248614
2.8807
gduggal-snapplatINDELD1_5map_l100_m1_e0het
85.1353
81.5550
89.0443
91.4683
986223114614127
19.1489
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.2031
96.0157
98.4203
68.4990
537422353588674
86.0465
hfeng-pmm2SNPtimap_l100_m2_e0*
99.5384
99.5445
99.5323
66.9341
487382234873122930
13.1004
hfeng-pmm2SNPtimap_l100_m2_e1*
99.5423
99.5494
99.5352
66.9275
492622234925523030
13.0435