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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
73951-74000 / 86044 show all
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
62.0729
98.0650
45.4073
82.4158
105922091075712933236
1.8248
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.0521
96.8708
99.2627
50.9309
647020964624845
93.7500
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.9803
95.8192
98.1699
71.2843
479020947748969
77.5281
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.9803
95.8192
98.1699
71.2843
479020947748969
77.5281
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
59.8779
85.1773
46.1658
67.0074
1201209119213901248
89.7842
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
91.1195
84.5528
98.7921
74.4432
114420911451413
92.8571
gduggal-bwafbSNPtvmap_l100_m2_e0*
98.8866
99.1651
98.6097
70.4745
248242092482435055
15.7143
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
73.2187
58.7771
97.0684
92.5467
29820929898
88.8889
asubramanian-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.4006
94.8267
92.0168
79.6069
38312093723323189
58.5139
bgallagher-sentieonINDEL*HG002complexvarhet
99.6698
99.5477
99.7922
57.6447
46003209456339561
64.2105
astatham-gatkINDELI16_PLUS**
97.4870
96.7226
98.2635
70.9237
6168209616810984
77.0642
raldana-dualsentieonSNPtimap_l100_m0_e0*
99.0308
99.0400
99.0217
66.4551
21562209215592139
4.2254
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.5788
95.2991
95.8600
66.1112
42372094191181178
98.3425
egarrison-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2155
98.8292
99.6047
53.9964
17642209176407027
38.5714
egarrison-hhgaSNPtimap_l150_m2_e0*
99.3881
98.9811
99.7985
75.2011
20303209203034120
48.7805
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.0530
88.5102
85.6431
75.6731
16102091718288261
90.6250
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.0530
88.5102
85.6431
75.6731
16102091718288261
90.6250
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
81.8581
70.0143
98.5246
47.8186
48820960197
77.7778
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
75.7737
66.0714
88.8158
57.1831
4072094055147
92.1569
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.9528
97.9466
99.9799
52.0162
9969209997021
50.0000
ndellapenna-hhgaSNPtvmap_l125_m2_e1het
98.8154
98.0195
99.6244
69.7483
10344209103443916
41.0256
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
91.0894
90.4040
91.7852
74.4242
19692091743156147
94.2308
qzeng-customINDELD6_15*homalt
94.3599
96.6962
92.1338
47.6739
61172096114522246
47.1264
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
80.2391
68.1335
97.5758
51.1834
4492106441613
81.2500
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
80.2391
68.1335
97.5758
51.1834
4492106441613
81.2500
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
98.8701
98.1095
99.6426
59.5927
10898210108733920
51.2821
gduggal-bwavardSNPtvmap_l100_m2_e0homalt
98.7765
97.7209
99.8553
63.6981
900421089711311
84.6154
gduggal-bwafbSNPtvmap_l100_m2_e1*
98.8936
99.1694
98.6194
70.5239
250732102507335156
15.9544
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
57.2505
41.9890
89.9408
89.1458
1522101521717
100.0000
gduggal-bwaplatINDELD1_5map_l100_m2_e1homalt
79.4574
66.1290
99.5146
88.0476
41021041021
50.0000
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
0.9434
0.4739
100.0000
77.7778
1210200
ghariani-varprowlSNPtvmap_l125_m1_e0*
97.4146
98.6888
96.1728
76.4417
1580621015806629115
18.2830
gduggal-snapplatINDELD1_5map_sirenhomalt
88.9159
82.0205
97.0771
85.2746
9582101096337
21.2121
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
94.5739
94.2717
94.8781
48.0950
34562103464187150
80.2139
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
75.9174
0.0000
0.0000
662210000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8298
96.1383
99.5819
26.2302
522821052402222
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.4690
95.5993
99.4132
24.4623
456221045742727
100.0000
ltrigg-rtg1INDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
89.1696
81.5951
98.2942
69.4959
9312109221616
100.0000
ltrigg-rtg1SNPtvmap_l100_m0_e0het
98.3382
97.0922
99.6165
55.2134
70122107013274
14.8148
ltrigg-rtg1SNPtvmap_l150_m2_e0het
98.3588
97.1042
99.6461
64.9467
70422107040254
16.0000
ltrigg-rtg1SNPtvmap_l150_m2_e1het
98.3805
97.1421
99.6509
65.0308
71382107136254
16.0000
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.3028
95.2767
97.3513
64.8567
42362104190114109
95.6140
jlack-gatkSNP*map_l100_m0_e0homalt
98.9979
98.1928
99.8163
60.9544
11410210114102116
76.1905
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.6703
94.6112
98.8210
55.5926
368721036884437
84.0909
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.4707
98.0557
98.8892
80.4368
105912101059411952
43.6975
egarrison-hhgaSNPtimap_l100_m0_e0het
99.1363
98.4982
99.7827
69.5619
13773210137743014
46.6667
egarrison-hhgaSNPtimap_l150_m2_e1*
99.3895
98.9866
99.7957
75.2728
20513210205134220
47.6190
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5409
99.1719
99.9126
55.4663
25149210251562213
59.0909
anovak-vgINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
29.0406
21.9331
42.9630
60.8128
59210116154129
83.7662
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.8162
92.9554
98.8588
48.8601
277121027723227
84.3750