PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
73701-73750 / 86044 show all
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0392
94.3279
99.9110
42.3116
3326200336633
100.0000
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
5.5046
2.9126
50.0000
97.1429
6200111
100.0000
jli-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.2879
94.7438
99.9725
25.8927
3605200363111
100.0000
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.4365
96.8847
97.9946
71.7201
6220200620612719
14.9606
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.4365
96.8847
97.9946
71.7201
6220200620612719
14.9606
jli-customSNPtimap_l100_m0_e0het
98.9518
98.5697
99.3369
65.4782
13783200137839228
30.4348
gduggal-snapfbSNP*map_l250_m1_e0homalt
95.4651
91.8798
99.3415
92.6863
22632002263159
60.0000
ghariani-varprowlINDELI1_5map_siren*
92.4494
93.3444
91.5714
83.4764
28052002803258121
46.8992
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
86.5974
85.2531
87.9848
76.9339
11622011157158144
91.1392
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
34.8632
22.3938
78.6667
77.6119
58201591616
100.0000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
0201000
gduggal-snapvardSNPtiHG002complexvarhetalt
0.0000
2.8986
0.0000
0.0000
6201000
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
55.2770
84.4907
41.0749
86.9620
10952011070153561
3.9739
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
0201000
gduggal-snapfbINDELI1_5HG002compoundhethet
76.4321
76.3529
76.5115
47.4370
64920160491857595
32.0409
anovak-vgINDELI1_5map_l150_m2_e1*
59.8471
62.1469
57.7114
90.7116
330201348255162
63.5294
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
55.4070
49.8753
62.3188
47.9245
200201258156121
77.5641
hfeng-pmm2SNPtimap_l100_m2_e0het
99.3370
99.3436
99.3305
69.0739
304212013041420516
7.8049
hfeng-pmm2SNPtimap_l100_m2_e1het
99.3427
99.3508
99.3346
69.0698
307592013075220616
7.7670
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
92.5715
90.7713
94.4444
75.0471
1977201175110393
90.2913
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.8331
99.2999
96.4089
78.7770
2851120128511106252
4.8964
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8331
99.2999
96.4089
78.7770
2851120128511106252
4.8964
ckim-isaacINDELD1_5map_l100_m2_e0homalt
80.2348
67.1031
99.7567
75.2260
41020141011
100.0000
gduggal-bwavardSNPtiHG002complexvarhetalt
0.0000
2.8986
0.0000
0.0000
6201000
gduggal-bwaplatSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.3459
90.0692
96.8700
86.2669
18232011826594
6.7797
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.6169
99.5602
99.6736
72.0020
455012014549714951
34.2282
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.6169
99.5602
99.6736
72.0020
455012014549714951
34.2282
ltrigg-rtg1INDEL*HG002compoundhethet
96.0922
95.0904
97.1154
68.4751
3893201393911762
52.9915
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
34.7605
22.3938
77.6316
77.3134
58201591717
100.0000
qzeng-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0978
99.2811
98.9152
61.5160
277582012790230667
21.8954
qzeng-customINDELD1_5map_l100_m2_e0het
89.9373
83.9968
96.7820
89.9588
105520112034027
67.5000
ciseli-customINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
3.3784
2.4272
5.5556
80.2198
52011171
5.8824
ckim-isaacINDEL*map_l125_m0_e0het
78.6935
65.7581
97.9644
91.7001
38620138582
25.0000
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
27.4282
17.8862
58.7940
51.5815
442021178282
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
55.3614
47.3958
66.5455
70.9916
1822021839289
96.7391
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
93.0590
87.7946
98.9950
44.8626
145320223642416
66.6667
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
83.0355
72.4420
97.2578
73.4079
5312025321513
86.6667
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
59.5825
43.7326
93.4524
71.9533
1572021571110
90.9091
gduggal-bwaplatINDELD16_PLUSHG002compoundhethet
64.7528
50.1235
91.4414
72.1455
2032022031918
94.7368
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
95.9408
94.7790
97.1314
64.3062
36672023623107103
96.2617
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.5660
94.2153
99.0370
52.3174
329020232913226
81.2500
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.4635
95.4566
97.4919
64.1585
42442024198108104
96.2963
hfeng-pmm3SNPtimap_l100_m2_e0*
99.6760
99.5874
99.7647
64.5930
487592024875211521
18.2609
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
12.1069
6.4815
91.6667
53.8462
142022221
50.0000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.7578
95.2969
96.2233
58.1854
4093202410216185
52.7950
astatham-gatkINDEL*HG002complexvarhetalt
96.3890
94.5391
98.3127
68.6296
349720237296463
98.4375
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.3822
94.2153
98.6511
52.7880
329020232914538
84.4444
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
93.6937
90.7254
96.8627
52.3369
19762026638215185
86.0465
astatham-gatkINDELD1_5HG002complexvar*
99.5714
99.3825
99.7611
58.5986
32513202325677866
84.6154
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
96.9627
94.4899
99.5685
38.0503
34642023461159
60.0000