PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
73651-73700 / 86044 show all
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0710
92.4735
99.9597
37.1168
2445199248111
100.0000
hfeng-pmm3SNPtimap_l100_m1_e0*
99.6742
99.5848
99.7638
62.8483
477321994772511321
18.5841
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.3477
97.0107
99.7221
77.9349
64581996459180
0.0000
qzeng-customINDELI1_5map_l150_m2_e1*
76.1376
62.5235
97.3306
93.7113
332199474138
61.5385
ndellapenna-hhgaSNPtvmap_l150_m2_e1*
98.9668
98.2699
99.6737
73.4886
11303199113033717
45.9459
qzeng-customINDEL*map_l125_m2_e0homalt
83.6240
73.9187
96.2629
86.5020
5641997472911
37.9310
qzeng-customINDEL*map_l125_m2_e1homalt
83.8858
74.2894
96.3291
86.5211
5751997612911
37.9310
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.4453
97.6298
99.2746
55.5967
819719982116020
33.3333
mlin-fermikitINDEL*map_l250_m2_e0*
53.6585
39.8792
81.9876
92.9540
1321991322921
72.4138
gduggal-bwafbSNP*map_l250_m2_e0*
97.8174
97.4762
98.1609
89.8565
7686199768614438
26.3889
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
6.0167
3.3981
26.2295
42.4528
7199329074
82.2222
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
73.7796
66.9983
82.0883
30.1926
4041991934422418
99.0521
gduggal-bwafbSNPtimap_l150_m2_e0het
98.3596
98.4551
98.2644
79.4915
126821991268222463
28.1250
gduggal-bwafbSNPtimap_l150_m2_e1het
98.3690
98.4710
98.2671
79.5893
128161991281622664
28.3186
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
77.7331
64.7163
97.3046
78.9683
365199361106
60.0000
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
46.3721
79.4421
32.7422
66.7816
76919975715551454
93.5048
ltrigg-rtg1SNPtimap_l250_m1_e0*
97.6589
95.6541
99.7497
82.8747
43801994383116
54.5455
jpowers-varprowlSNPtvmap_l125_m0_e0het
94.8319
95.4783
94.1941
83.6101
4202199420225965
25.0965
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9739
98.2672
99.6909
53.0163
11285199112893533
94.2857
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
6.3636
3.3981
50.0000
96.8254
7199221
50.0000
gduggal-snapfbSNPtvmap_l150_m0_e0*
94.8348
95.2324
94.4405
83.5277
3975199397523489
38.0342
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8987
98.8832
98.9142
71.1221
1762019917218189154
81.4815
cchapple-customSNP*map_l150_m0_e0homalt
97.4937
95.1333
99.9743
71.2925
3890199388811
100.0000
cchapple-customSNPtimap_l250_m2_e0*
96.4779
96.0264
96.9336
90.1381
4809199480515241
26.9737
ckim-dragenINDELD1_5HG002complexvar*
99.5269
99.3917
99.6625
58.3864
325161993247811086
78.1818
ckim-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4089
99.5877
99.2308
76.0442
4807219947859371265
71.4286
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
81.3778
69.3846
98.3834
31.9182
45119942676
85.7143
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1090
96.6453
99.6177
51.2288
573319957332220
90.9091
dgrover-gatkSNP*map_l125_m2_e0het
99.1639
99.3212
99.0070
77.2838
291191992911329256
19.1781
dgrover-gatkSNP*map_l125_m2_e1het
99.1713
99.3286
99.0144
77.3174
294411992943529356
19.1126
ckim-vqsrSNP*HG002compoundhethet
99.1735
98.5964
99.7573
46.7768
13979199139773425
73.5294
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.4801
83.0652
88.0396
45.1406
981200979133132
99.2481
dgrover-gatkINDEL*HG002complexvarhetalt
96.4173
94.5931
98.3131
68.7891
349920037306463
98.4375
dgrover-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.9517
89.0231
99.4582
32.2317
1622200165298
88.8889
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
78.0231
64.9737
97.6316
49.3333
37120037198
88.8889
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
58.7698
96.5789
42.2354
60.5712
5646200563877117534
97.7046
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.7698
96.5789
42.2354
60.5712
5646200563877117534
97.7046
gduggal-bwafbSNP*map_l250_m2_e1*
97.8266
97.4959
98.1596
89.9363
7787200778714639
26.7123
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
5.6604
2.9126
100.0000
95.4545
6200200
gduggal-bwavardSNP*map_l250_m2_e1*
90.6461
97.4959
84.6957
92.1274
77872007709139345
3.2304
hfeng-pmm2INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8008
96.2364
99.4170
63.5191
511420051163022
73.3333
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
88.3369
79.4872
99.4041
37.5744
77520083455
100.0000
raldana-dualsentieonINDELI1_5HG002complexvarhet
99.3867
98.9004
99.8777
56.7573
17989200179702213
59.0909
asubramanian-gatkINDEL*map_l150_m2_e0*
90.1581
85.7955
94.9883
97.8029
12082001213647
10.9375
anovak-vgSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.7152
97.3162
96.1216
41.6514
72522007336296141
47.6351
mlin-fermikitINDEL*map_l250_m2_e1*
53.7374
39.9399
82.0988
93.1530
1332001332921
72.4138
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2810
98.6274
95.9709
85.0094
143712001436360345
7.4627
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2810
98.6274
95.9709
85.0094
143712001436360345
7.4627
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.4055
83.0652
87.8815
45.0961
981200979135134
99.2593
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.0392
94.3279
99.9110
42.3116
3326200336633
100.0000