PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
73601-73650 / 86044 show all
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
63.3990
50.8728
84.1085
55.4404
2041972174132
78.0488
ciseli-customSNPtvHG002compoundhethomalt
78.4375
94.1854
67.2014
50.7638
319119731841554424
27.2844
gduggal-bwavardSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.9826
95.8648
92.1728
78.1956
4567197452238448
12.5000
gduggal-bwavardSNP*map_l250_m2_e0*
90.6036
97.5016
84.6171
92.0596
76881977613138444
3.1792
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
59.9593
59.9593
59.9593
55.8744
295197295197173
87.8173
gduggal-bwafbSNPtimap_l150_m1_e0het
98.3399
98.4074
98.2724
78.0641
121731971217321463
29.4393
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
98.5877
98.1945
98.9841
59.2905
107141971062010934
31.1927
gduggal-snapvardSNPtvmap_l150_m2_e0het
88.6343
97.2835
81.3975
85.0700
70551977036160895
5.9080
gduggal-snapplatINDELD6_15map_l100_m2_e0*
38.8774
25.3788
83.0508
94.3378
6719749101
10.0000
bgallagher-sentieonINDELI16_PLUS*hetalt
95.0034
90.6101
99.8444
57.6357
1901197192533
100.0000
asubramanian-gatkINDELD1_5map_l100_m2_e0*
93.0444
89.7128
96.6330
87.5446
17181971722607
11.6667
dgrover-gatkSNPtimap_l125_m1_e0*
99.3758
99.3284
99.4233
72.4326
291381972913416941
24.2604
egarrison-hhgaINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.5573
82.7344
92.9773
75.9228
9441979407143
60.5634
rpoplin-dv42SNPtimap_l125_m2_e1het
99.1705
98.9679
99.3738
71.8144
188901971888611974
62.1849
raldana-dualsentieonSNP*map_l125_m0_e0het
98.3431
98.4365
98.2499
76.1833
12466198124632222
0.9009
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
61.6145
48.5714
84.2342
85.1703
187198187355
14.2857
gduggal-bwaplatINDELD1_5map_l150_m2_e1het
76.1457
62.0690
98.4802
96.0428
32419832451
20.0000
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
11.2554
6.1611
65.0000
68.2540
131981374
57.1429
gduggal-bwaplatINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
72.0169
58.7500
93.0233
81.0095
2821982802114
66.6667
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
52.9207
36.3344
97.3684
65.7658
11319811133
100.0000
gduggal-bwavardSNP*map_l125_m0_e0homalt
98.3897
97.0501
99.7668
70.8893
651419864171511
73.3333
gduggal-bwavardSNPtimap_l125_m0_e0het
92.1685
97.6038
87.3066
84.9758
80651988013116559
5.0644
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
31.6497
19.5122
83.7398
62.9518
481981032020
100.0000
qzeng-customINDELD1_5map_l100_m1_e0het
89.6970
83.6228
96.7227
89.7617
101119811513927
69.2308
ltrigg-rtg2SNP*map_l250_m0_e0het
92.7987
86.8526
99.6189
78.5270
1308198130750
0.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.3412
95.1435
95.5397
38.5245
38791983877181170
93.9227
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.1505
94.9192
99.4892
54.6175
369919837011911
57.8947
hfeng-pmm2SNPtimap_l100_m1_e0het
99.3403
99.3387
99.3419
67.8029
297441982973719716
8.1218
hfeng-pmm3SNP*map_l125_m2_e1het
99.4275
99.3320
99.5233
72.3246
294421982943614113
9.2199
ckim-dragenINDELI1_5HG002complexvar*
99.5809
99.4065
99.7559
56.6825
33165198331058167
82.7160
ciseli-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
83.6651
85.4732
81.9319
70.4517
11651981179260119
45.7692
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
88.0210
92.7552
83.7467
49.6639
25351982195426362
84.9765
ckim-vqsrINDEL*map_siren*
97.9969
97.3279
98.6752
85.5636
721219872259719
19.5876
egarrison-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5328
99.2846
99.7822
62.2610
27480198274916036
60.0000
ghariani-varprowlINDELI1_5HG002compoundhethet
21.0205
76.7059
12.1791
72.5111
65219872151995126
98.5959
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
78.1683
81.1429
75.4042
51.8889
8521981306426326
76.5258
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
65.5717
86.0759
52.9568
90.4618
12241981200106655
5.1595
gduggal-snapvardSNPtvmap_l150_m2_e1het
88.7208
97.3054
81.5281
85.1064
71501987128161597
6.0062
bgallagher-sentieonINDELI16_PLUSHG002compoundhet*
93.0399
90.7606
95.4367
53.0631
194519819459393
100.0000
anovak-vgINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
28.1418
19.8381
48.4018
54.7521
4919810611390
79.6460
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
76.6177
84.7222
69.9283
81.0889
10981981365587286
48.7223
astatham-gatkSNPtv*homalt
99.9694
99.9475
99.9912
19.9071
3769251983769103326
78.7879
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.9353
96.3590
99.5640
26.8986
524019852522322
95.6522
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
39.5158
40.0000
39.0432
37.8119
132198253395347
87.8481
asubramanian-gatkINDELD1_5map_l100_m2_e1*
93.0516
89.7370
96.6205
87.5894
17401991744617
11.4754
asubramanian-gatkINDELI1_5map_l100_m1_e0*
91.2060
85.1382
98.2051
87.1018
11401991149214
19.0476
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.3437
83.1499
87.6565
44.9532
982199980138137
99.2754
anovak-vgSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
97.6411
98.1762
97.1119
60.4037
1071219911029328130
39.6341
anovak-vgSNPtvsegdup*
97.7325
97.6676
97.7974
93.3295
8333199830318780
42.7807
astatham-gatkSNP*map_l250_m0_e0het
92.0747
86.7862
98.0495
94.4847
13071991307263
11.5385