PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
73551-73600 / 86044 show all
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7267
93.7500
99.8985
40.2385
2925195295433
100.0000
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
95.1601
0.0000
0.0000
3834195000
ciseli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50het
84.0742
97.1085
74.1248
53.6075
65491956606230639
1.6912
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
96.5046
98.2128
94.8548
61.3261
107161951071158192
15.8348
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.5741
90.8365
94.3795
65.5301
19331952099125115
92.0000
ckim-gatkINDEL*HG002complexvarhet
99.6665
99.5780
99.7552
57.8728
460171954563611264
57.1429
cchapple-customINDELD16_PLUSHG002compoundhet*
93.0802
91.6275
94.5797
31.0588
21451962408138135
97.8261
ckim-dragenSNP*map_l125_m0_e0het
97.3570
98.4523
96.2857
80.0772
124681961246948137
7.6923
gduggal-bwavardSNPtimap_l150_m2_e1homalt
98.6309
97.4522
99.8384
73.3079
74971967414129
75.0000
gduggal-bwafbSNPtimap_l100_m0_e0het
98.5173
98.5983
98.4365
72.6281
137871961378821963
28.7671
gduggal-bwaplatINDELD1_5map_l150_m2_e0het
76.0766
61.8677
98.7578
96.0549
31819631841
25.0000
eyeh-varpipeINDELD16_PLUSHG002compoundhethet
53.8274
51.6049
56.2500
59.7990
209196453535
100.0000
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
17.4592
9.6774
89.1304
79.6460
211964154
80.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
81.5245
69.8462
97.8923
31.4607
45419641898
88.8889
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.9176
98.2314
99.6135
43.6336
10886196108264239
92.8571
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
68.4924
85.2853
57.2248
41.5985
1136196539040293815
94.6885
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.1553
96.5499
82.8127
57.5437
5485196548811391055
92.6251
ghariani-varprowlSNP*map_l250_m1_e0*
95.4295
97.2861
93.6425
90.9971
7026196702647784
17.6101
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
92.5787
91.0009
94.2122
75.0968
1982196175810896
88.8889
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
95.9582
94.9341
97.0045
63.7624
36731963627112107
95.5357
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
92.4559
95.1485
89.9115
78.4139
38441963556399354
88.7218
ckim-isaacINDELD1_5map_l100_m1_e0homalt
80.0809
66.8919
99.7481
73.7260
39619639611
100.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
98.3003
96.8730
99.7704
41.9223
607219660831411
78.5714
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.6047
83.4039
87.9249
45.2229
985196983135134
99.2593
ckim-vqsrINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7096
93.7179
99.8985
40.2466
2924196295333
100.0000
dgrover-gatkINDELI16_PLUS**
97.6461
96.9265
98.3766
71.1206
6181196618110280
78.4314
dgrover-gatkSNP*map_l125_m0_e0*
98.9327
98.9889
98.8765
77.4655
191891961918621848
22.0183
dgrover-gatkSNP*map_l125_m1_e0het
99.1524
99.3097
98.9956
76.1623
281961962819028655
19.2308
dgrover-gatkSNPti*homalt
99.9851
99.9756
99.9946
15.9219
8028421968028334339
90.6977
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
83.5091
84.3949
82.6418
67.4764
10601961195251203
80.8765
raldana-dualsentieonINDELI6_15HG002complexvar*
97.4043
95.9098
98.9460
56.6890
459619646004948
97.9592
bgallagher-sentieonINDELI16_PLUSHG002compoundhethetalt
95.0877
90.6355
100.0000
45.8521
1897196191900
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0950
92.5870
99.8794
36.4264
2448196248433
100.0000
cchapple-customINDEL*HG002compoundhethet
96.8882
95.2125
98.6240
55.6229
389819650675707621
87.8359
anovak-vgINDELI6_15HG002complexvarhomalt
62.2576
83.8550
49.5068
39.2928
101819610541075989
92.0000
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
53.2746
85.2632
38.7403
67.1378
1134196114418091797
99.3367
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
94.1085
91.0009
97.4359
68.1633
198219619765227
51.9231
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.9702
98.9938
96.9676
70.5278
193821971957061214
2.2876
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9702
98.9938
96.9676
70.5278
193821971957061214
2.2876
ltrigg-rtg1SNPtimap_l250_m2_e1het
96.8015
94.0285
99.7430
81.3425
3102197310582
25.0000
jpowers-varprowlSNPtvmap_l150_m0_e0*
95.1094
95.2803
94.9391
85.9113
3977197397721255
25.9434
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.6889
92.8520
96.5999
48.0063
255919725579087
96.6667
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1118
92.5492
99.9597
37.5723
2447197248311
100.0000
hfeng-pmm3SNP*map_l125_m2_e0het
99.4247
99.3281
99.5214
72.2786
291211972911514013
9.2857
hfeng-pmm2SNP*map_l100_m0_e0*
99.2701
99.4001
99.1404
70.5461
326441973264028334
12.0141
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.5793
94.7690
92.4191
52.4483
35691973572293241
82.2526
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.5793
94.7690
92.4191
52.4483
35691973572293241
82.2526
qzeng-customSNPtvmap_l250_m0_e0het
74.5292
65.5594
86.3426
98.2078
3751973735942
71.1864
ndellapenna-hhgaSNPtvmap_l150_m2_e0*
98.9623
98.2651
99.6695
73.4684
11158197111583717
45.9459
ckim-dragenSNP*map_l150_m0_e0*
97.7617
98.3627
97.1680
81.2391
118351971183734542
12.1739