PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
73351-73400 / 86044 show all
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
86.2429
82.3474
90.5252
56.5548
8771888799263
68.4783
gduggal-snapvardSNPtvmap_l150_m1_e0het
88.3469
97.2934
80.9072
84.0922
67581886742159194
5.9082
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
79.5312
73.0273
87.3070
53.3227
5091885097473
98.6486
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
98.2369
96.7202
99.8020
58.3539
55441885545119
81.8182
anovak-vgINDELI1_5map_l150_m1_e0*
60.3183
62.8458
57.9861
89.7890
318188334242150
61.9835
astatham-gatkSNP*map_l100_m2_e0homalt
99.6137
99.3169
99.9123
60.3292
27335188273352419
79.1667
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.5317
95.5639
99.5821
76.9923
40501884051170
0.0000
cchapple-customSNPtimap_l250_m1_e0*
96.3982
95.8943
96.9074
89.5799
4391188438714038
27.1429
gduggal-bwaplatINDELD6_15HG002complexvarhomalt
88.8329
83.9179
94.3595
65.4443
9811889875953
89.8305
gduggal-bwafbSNP*map_l100_m2_e0homalt
99.5956
99.3169
99.8758
64.6135
27335188273353420
58.8235
jli-customSNPtimap_l150_m1_e0het
98.8959
98.4802
99.3151
73.0550
12182188121808429
34.5238
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.0960
96.8307
99.3948
47.7739
574418857483530
85.7143
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
85.7747
91.3682
80.8266
73.3477
19901881897450430
95.5556
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.3801
97.1609
99.6303
75.8203
64681896468244
16.6667
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3796
95.3528
97.4288
66.7644
3878189386510294
92.1569
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.0338
98.2985
99.7802
60.1845
1091918910893246
25.0000
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.1020
85.3602
100.0000
31.3904
1102189113000
hfeng-pmm2INDELI6_15*het
98.7550
98.1162
99.4021
57.6463
984418998095939
66.1017
hfeng-pmm3INDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.8671
89.7394
98.3929
66.3731
165318916532715
55.5556
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1148
92.5561
99.9581
35.3992
2350189238611
100.0000
hfeng-pmm3SNP*map_l150_m1_e0*
99.4475
99.3825
99.5125
74.0748
304201893041414923
15.4362
hfeng-pmm1SNPtvmap_siren*
99.7188
99.5885
99.8494
56.2301
45741189457346922
31.8841
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.4852
94.1121
94.8613
61.6630
30211893009163146
89.5706
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
54.4494
95.7490
38.0411
54.7898
4257189428069716935
99.4836
gduggal-snapvardINDEL*map_l100_m2_e0homalt
91.2669
85.0119
98.5155
76.6062
107218914602218
81.8182
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.0203
98.2985
99.7527
60.4577
1091918910893279
33.3333
gduggal-snapvardSNP*map_l250_m2_e0het
81.9515
96.3612
71.2908
92.3358
50051894954199592
4.6115
egarrison-hhgaSNP*map_l150_m0_e0*
99.0549
98.4292
99.6886
78.8145
11843189118433716
43.2432
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
81.9462
89.6097
75.4902
79.0668
16301891463475410
86.3158
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
81.9462
89.6097
75.4902
79.0668
16301891463475410
86.3158
mlin-fermikitINDELD1_5map_l125_m0_e0het
61.6561
45.2174
96.8750
79.2746
15618915552
40.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
87.2924
84.6591
90.0947
59.0476
1043189104611586
74.7826
qzeng-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
83.2079
85.6274
80.9215
46.7151
11261891247294107
36.3946
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
76.9319
72.4891
81.9549
59.4512
4981891308288179
62.1528
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.3080
97.2255
99.4149
40.8780
662318966273939
100.0000
astatham-gatkSNP*map_l100_m2_e1homalt
99.6157
99.3200
99.9131
60.3111
27607189276072419
79.1667
jpowers-varprowlSNPtimap_l250_m2_e0het
94.0906
94.1918
93.9896
92.1804
3065189306519654
27.5510
jli-customSNPtimap_l150_m2_e0het
98.9128
98.5327
99.2958
74.7496
12692189126909030
33.3333
jli-customSNPtimap_l150_m2_e1het
98.9202
98.5478
99.2954
74.8618
12826189128249130
32.9670
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
91.4848
85.6601
98.1595
56.6489
112918911202121
100.0000
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0468
95.1501
99.0206
54.5933
370818938423835
92.1053
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0046
95.1501
98.9328
56.4186
370818937084039
97.5000
gduggal-bwafbSNP*map_l100_m2_e1homalt
99.5977
99.3200
99.8770
64.6290
27607189276073420
58.8235
gduggal-bwaplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
37.0130
23.1707
91.9355
92.3551
571895750
0.0000
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
64.5522
47.6584
100.0000
63.8075
17319017300
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
73.9073
59.4883
97.5524
91.9640
27919027977
100.0000
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_51to200het
75.3138
61.2245
97.8261
47.4389
30019013052926
89.6552
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.2884
98.8435
99.7372
57.4242
16239190163214329
67.4419
gduggal-bwafbINDELI16_PLUSHG002complexvarhetalt
57.7977
43.2836
86.9565
69.5364
1451904066
100.0000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
78.7591
65.2015
99.4350
82.5616
35619035221
50.0000