PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
73251-73300 / 86044 show all
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
61.0169
43.9024
100.0000
54.0925
14418412900
ckim-dragenINDELI16_PLUS*hetalt
95.3433
91.2297
99.8454
58.3691
1914184193733
100.0000
ckim-dragenSNPtimap_l125_m2_e1het
97.7431
99.0360
96.4836
78.3312
189031841890568965
9.4340
ciseli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
87.2844
97.5309
78.9862
44.6999
72681847277193672
3.7190
cchapple-customSNPtvmap_l100_m0_e0het
95.4613
97.4522
93.5501
77.1681
7038184704948683
17.0782
cchapple-customSNPtvmap_l125_m1_e0homalt
98.4050
96.8601
100.0000
62.4454
5676184567300
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1822
92.7531
99.8747
34.7506
2355184239133
100.0000
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.6409
98.1777
97.1099
61.1163
991318410114301207
68.7708
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
98.5442
98.3435
98.7456
63.1402
109241841133614415
10.4167
jlack-gatkSNPtvmap_l125_m2_e0*
95.1584
98.8841
91.7032
81.2684
1630518416303147590
6.1017
jlack-gatkINDELD16_PLUSHG002compoundhet*
92.8541
92.1401
93.5792
35.3980
21571842157148143
96.6216
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.2699
96.6164
99.9810
27.1104
5254184526610
0.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6632
95.6583
99.7539
76.8156
40541844054100
0.0000
jlack-gatkSNPtvmap_l125_m2_e1*
95.1831
98.8894
91.7447
81.3088
1647218516470148291
6.1404
gduggal-snapvardSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3473
97.2572
99.4621
37.7380
656018564723518
51.4286
ghariani-varprowlSNPtimap_l150_m0_e0*
96.8336
97.6466
96.0340
83.6908
7676185767631783
26.1830
gduggal-snapfbSNP*lowcmp_SimpleRepeat_quadTR_11to50*
90.7849
98.9826
83.8412
55.2905
17998185181033489157
4.4999
jpowers-varprowlSNPtimap_l250_m1_e0het
93.7195
93.7668
93.6722
91.9387
2783185278318854
28.7234
jli-customSNPtimap_l125_m0_e0*
98.9692
98.5504
99.3915
69.4510
12577185125777730
38.9610
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8431
99.0551
98.6319
76.1009
193941851939426919
7.0632
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8431
99.0551
98.6319
76.1009
193941851939426919
7.0632
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2994
98.9826
99.6182
37.5156
17998185180046946
66.6667
ndellapenna-hhgaSNPtimap_l150_m0_e0*
98.6696
97.6466
99.7142
77.5024
767618576762211
50.0000
ltrigg-rtg2SNPtvmap_l150_m0_e0*
97.6140
95.5678
99.7497
64.5964
39891853986100
0.0000
gduggal-bwaplatINDEL*map_l250_m1_e0*
56.4706
39.3443
100.0000
98.8721
12018512000
gduggal-bwaplatINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
88.1747
79.7149
98.6431
65.5124
727185727108
80.0000
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
7.0352
3.6458
100.0000
78.1250
7185700
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.2810
93.7940
96.8159
46.5107
27961853740123114
92.6829
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.0242
78.7844
99.7191
26.3702
68718571022
100.0000
astatham-gatkINDEL*map_l100_m2_e1*
96.5544
95.0745
98.0811
86.7793
357118535787018
25.7143
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.0242
78.7844
99.7191
26.2176
68718571022
100.0000
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.3003
93.0030
99.8400
33.3511
2459185249644
100.0000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.3320
98.9618
97.7101
71.4422
1763418517239404355
87.8713
ckim-isaacINDELI1_5map_l150_m2_e0*
77.9463
64.3545
98.8166
91.4754
33418533441
25.0000
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
94.7533
0.0000
0.0000
3341185000
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
94.7533
0.0000
0.0000
3341185000
ckim-dragenINDELI16_PLUSHG002compoundhet*
93.5490
91.3672
95.8374
52.5778
195818519578585
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.0242
78.7844
99.7191
26.2176
68718571022
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.3003
93.0030
99.8400
33.3511
2459185249644
100.0000
ckim-gatkSNP*segdup*
98.8880
99.3409
98.4392
93.5811
278821852787644214
3.1674
ckim-dragenSNP*map_l250_m2_e1*
97.2818
97.6712
96.8956
89.8498
7801186780325032
12.8000
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3535
95.3835
99.4066
24.9710
384318638532321
91.3043
qzeng-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
92.1962
96.6768
88.1125
56.1680
5411186122821657662
39.9517
qzeng-customINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
80.2499
68.0961
97.6847
47.3287
3971868862117
80.9524
gduggal-snapplatINDEL*map_l125_m2_e0homalt
84.9635
75.6225
96.9372
90.0183
577186633200
0.0000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
63.5479
97.2152
47.2013
46.3823
6493186652773017199
98.6029
gduggal-snapplatINDELD1_5map_l100_m0_e0*
84.4218
78.4473
91.3813
92.4805
6771867747317
23.2877
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
71.3745
60.3412
87.3457
93.7848
2831862834121
51.2195
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
87.8155
85.8877
89.8319
60.6862
11321861122127125
98.4252
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1785
92.6743
99.9582
35.8734
2353186238911
100.0000