PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
73151-73200 / 86044 show all
ciseli-customINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
18.1984
12.1359
36.3636
91.4286
25181244224
57.1429
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
77.6372
81.0471
74.5027
77.6881
774181824282193
68.4397
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
52.0117
48.8701
55.5851
61.8274
173181209167115
68.8623
gduggal-snapplatINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
25.0503
16.2037
55.1724
73.1481
3518132268
30.7692
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
77.4032
63.1365
100.0000
29.1489
31018133300
hfeng-pmm3INDELD6_15HG002compoundhethet
81.8478
78.8551
85.0765
66.7091
675181667117113
96.5812
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
94.8883
93.2614
96.5730
77.2592
25051812508896
6.7416
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
93.1937
87.3160
99.9198
34.2646
1246181124610
0.0000
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_triTR_51to200*
19.2500
18.4685
20.1005
60.4374
4118140159151
94.9686
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
75.4333
60.8225
99.2832
50.1786
28118127721
50.0000
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
87.8092
82.7619
93.5122
40.8038
8691813416237233
98.3122
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
65.3479
50.1377
93.8053
47.9263
18218110677
100.0000
gduggal-bwafbSNPtvmap_l125_m1_e0*
98.6420
98.8699
98.4152
72.8937
158351811583525550
19.6078
qzeng-customINDELD1_5map_l100_m0_e0*
86.8238
79.0267
96.3280
91.0593
6821817873023
76.6667
qzeng-customINDELD1_5map_l150_m2_e0*
85.0239
76.2779
96.0352
93.3503
5821816542723
85.1852
mlin-fermikitINDEL*map_l150_m2_e0homalt
67.7201
62.3701
74.0741
84.8315
30018130010592
87.6190
mlin-fermikitINDELI1_5map_l100_m2_e1homalt
74.9478
66.4815
85.8852
77.4663
3591813595957
96.6102
mlin-fermikitINDELI1_5map_l150_m2_e1het
59.5186
42.9022
97.1429
85.6704
13618113642
50.0000
mlin-fermikitSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.3589
97.3161
99.4242
37.2504
65631816562385
13.1579
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
88.7284
98.2608
80.8820
41.3226
102261811056424972416
96.7561
egarrison-hhgaSNPtimap_l150_m2_e0het
99.1606
98.5948
99.7330
76.2545
12700181127003413
38.2353
ckim-isaacINDELI1_5map_l100_m2_e0homalt
79.0960
65.9134
98.8701
77.8750
35018135042
50.0000
ckim-isaacINDELI1_5map_l150_m1_e0*
77.6978
64.0316
98.7805
90.5503
32418232441
25.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.2389
79.1284
99.7203
27.1152
69018271322
100.0000
egarrison-hhgaSNPtimap_l150_m2_e1het
99.1616
98.6016
99.7280
76.3347
12833182128333513
37.1429
egarrison-hhgaSNPtvHG002complexvarhomalt
99.8748
99.8086
99.9410
22.7459
94929182949385646
82.1429
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
66.2963
49.5845
100.0000
63.8554
17918218000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
9.8039
5.2083
83.3333
89.0909
101821022
100.0000
gduggal-snapfbSNPtvmap_l100_m0_e0homalt
97.1883
95.2678
99.1879
78.6252
36641823664306
20.0000
gduggal-snapfbSNPtvmap_l150_m1_e0het
95.6989
97.3798
94.0751
75.4297
67641826764426173
40.6103
gduggal-snapplatINDEL*map_l125_m1_e0homalt
84.6016
75.1366
96.7949
89.4755
550182604200
0.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
75.9688
61.9247
98.2517
67.2018
29618228155
100.0000
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
12.5828
9.4527
18.8119
88.2558
19182198246
56.0976
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
59.7902
69.7674
52.3096
34.3980
420182419382382
100.0000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
9.8039
5.2083
83.3333
88.7850
101821022
100.0000
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
66.2963
49.5845
100.0000
63.9279
17918218000
jli-customSNP*map_l250_m2_e1het
97.7120
96.5426
98.9101
87.1957
508218250825624
42.8571
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0423
85.9024
99.1274
31.9073
11091821136108
80.0000
asubramanian-gatkINDEL*map_l100_m0_e0*
91.6436
88.3557
95.1857
96.6934
13811821384708
11.4286
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0609
95.3297
98.8561
56.5082
371518237164336
83.7209
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_51to200*
94.2145
93.1450
95.3088
77.7623
2473182243812091
75.8333
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
88.0678
85.5096
90.7838
68.5024
1074182105410748
44.8598
cchapple-customSNP*HG002compoundhethet
98.9809
98.7163
99.2469
44.7646
139961821620912392
74.7967
ciseli-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
76.2286
96.1797
63.1327
74.0117
458218246152695108
4.0074
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.2465
93.1191
97.4734
81.1308
24631822469645
7.8125
qzeng-customINDELD1_5map_l150_m2_e1*
85.2592
76.6067
96.1151
93.3295
5961826682723
85.1852
mlin-fermikitINDEL*map_l150_m2_e1homalt
68.2068
63.0081
74.3405
84.7866
31018231010794
87.8505
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
92.4964
96.7963
88.5622
52.1231
54991825482708693
97.8814
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.5241
97.2660
99.8150
78.5959
64751826476121
8.3333
jlack-gatkSNPtvmap_l125_m1_e0*
95.0729
98.8636
91.5621
79.9369
1583418215832145989
6.1001