PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73101-73150 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.4658 | 89.4891 | 95.6473 | 67.6067 | 1524 | 179 | 1692 | 77 | 41 | 53.2468 | |
| eyeh-varpipe | SNP | tv | HG002complexvar | het | 99.6993 | 99.8812 | 99.5181 | 20.4147 | 150555 | 179 | 142480 | 690 | 71 | 10.2899 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 179 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.3698 | 88.6709 | 98.5945 | 70.7743 | 1401 | 179 | 1403 | 20 | 6 | 30.0000 | |
| astatham-gatk | INDEL | * | map_l100_m2_e0 | * | 96.5801 | 95.1530 | 98.0507 | 86.7138 | 3514 | 179 | 3521 | 70 | 18 | 25.7143 | |
| anovak-vg | INDEL | * | map_siren | hetalt | 0.0000 | 27.5304 | 0.0000 | 0.0000 | 68 | 179 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.6966 | 92.5757 | 96.9171 | 59.1377 | 2232 | 179 | 2232 | 71 | 67 | 94.3662 | |
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | het | 98.9928 | 99.3695 | 98.6190 | 74.6006 | 28213 | 179 | 28207 | 395 | 55 | 13.9241 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1287 | 97.8680 | 98.3908 | 64.4221 | 8217 | 179 | 8193 | 134 | 104 | 77.6119 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 93.1495 | 88.0107 | 98.9255 | 35.6682 | 1314 | 179 | 1381 | 15 | 14 | 93.3333 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.0535 | 96.5032 | 97.6101 | 85.2011 | 4940 | 179 | 4942 | 121 | 84 | 69.4215 | |
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5289 | 99.3598 | 99.6985 | 56.1737 | 27780 | 179 | 27779 | 84 | 9 | 10.7143 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.0960 | 89.8927 | 98.7117 | 42.9671 | 1592 | 179 | 1609 | 21 | 20 | 95.2381 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002complexvar | het | 88.9628 | 83.8302 | 94.7650 | 61.7021 | 928 | 179 | 887 | 49 | 32 | 65.3061 | |
| egarrison-hhga | INDEL | I16_PLUS | * | het | 94.6145 | 93.4143 | 95.8459 | 68.1424 | 2539 | 179 | 2538 | 110 | 63 | 57.2727 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.4011 | 86.1348 | 99.6507 | 30.4797 | 1112 | 179 | 1141 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l125_m1_e0 | het | 97.7308 | 99.0200 | 96.4747 | 76.6075 | 18087 | 179 | 18089 | 661 | 63 | 9.5310 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | * | 98.6522 | 99.2920 | 98.0206 | 71.3656 | 25104 | 179 | 25107 | 507 | 45 | 8.8757 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3348 | 98.9955 | 97.6830 | 71.3901 | 17640 | 179 | 17243 | 409 | 359 | 87.7751 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.4484 | 88.3268 | 70.5573 | 76.2813 | 1362 | 180 | 1342 | 560 | 119 | 21.2500 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | het | 72.4170 | 65.5172 | 80.9412 | 93.9878 | 342 | 180 | 344 | 81 | 22 | 27.1605 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 8.1356 | 4.2553 | 92.3077 | 59.3750 | 8 | 180 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | * | 84.1285 | 78.9965 | 89.9736 | 93.9438 | 677 | 180 | 682 | 76 | 4 | 5.2632 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | het | 96.3272 | 98.5786 | 94.1762 | 82.3918 | 12484 | 180 | 12484 | 772 | 162 | 20.9845 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | homalt | 98.7135 | 97.5656 | 99.8888 | 29.2249 | 7214 | 180 | 7187 | 8 | 7 | 87.5000 | |
| raldana-dualsentieon | SNP | tv | map_siren | * | 99.5658 | 99.6081 | 99.5235 | 57.2670 | 45750 | 180 | 45742 | 219 | 8 | 3.6530 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.3117 | 97.1963 | 99.4531 | 73.3782 | 6240 | 180 | 6183 | 34 | 24 | 70.5882 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.3117 | 97.1963 | 99.4531 | 73.3782 | 6240 | 180 | 6183 | 34 | 24 | 70.5882 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.2696 | 94.2821 | 98.3427 | 70.1080 | 2968 | 180 | 2967 | 50 | 2 | 4.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.7576 | 98.3503 | 99.1683 | 60.5203 | 10731 | 180 | 10731 | 90 | 83 | 92.2222 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.4522 | 91.6512 | 93.2674 | 90.5520 | 1976 | 180 | 1981 | 143 | 93 | 65.0350 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.7237 | 93.5806 | 91.8824 | 43.4731 | 2624 | 180 | 2626 | 232 | 212 | 91.3793 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.3090 | 96.8597 | 99.8023 | 58.5209 | 5552 | 180 | 5553 | 11 | 9 | 81.8182 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | * | 77.3562 | 63.7097 | 98.4424 | 89.5098 | 316 | 180 | 316 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9557 | 84.7716 | 98.1132 | 33.9074 | 1002 | 180 | 1092 | 21 | 18 | 85.7143 | |
| egarrison-hhga | SNP | ti | map_l150_m1_e0 | het | 99.1299 | 98.5449 | 99.7219 | 75.0856 | 12190 | 180 | 12190 | 34 | 13 | 38.2353 | |
| ckim-vqsr | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5376 | 99.1089 | 99.9700 | 56.4901 | 20019 | 180 | 20019 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_siren | homalt | 99.7291 | 99.5253 | 99.9338 | 52.9575 | 37736 | 180 | 37736 | 25 | 14 | 56.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.4479 | 95.7527 | 89.3636 | 86.9652 | 4058 | 180 | 4016 | 478 | 89 | 18.6192 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 80.1285 | 70.1493 | 93.4180 | 55.0363 | 423 | 180 | 809 | 57 | 53 | 92.9825 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.4596 | 98.1094 | 87.4251 | 55.1844 | 9341 | 180 | 9337 | 1343 | 1337 | 99.5532 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 10.9091 | 6.2500 | 42.8571 | 61.9565 | 12 | 180 | 15 | 20 | 16 | 80.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 17.0507 | 0.0000 | 0.0000 | 37 | 180 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.5313 | 12.1359 | 50.0000 | 45.6954 | 25 | 181 | 41 | 41 | 38 | 92.6829 | |
| anovak-vg | SNP | ti | map_l250_m0_e0 | het | 69.1155 | 80.6210 | 60.4839 | 96.0595 | 753 | 181 | 750 | 490 | 108 | 22.0408 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | het | 99.0076 | 99.3826 | 98.6355 | 75.8378 | 29137 | 181 | 29131 | 403 | 55 | 13.6476 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e1 | het | 99.0167 | 99.3893 | 98.6469 | 75.8815 | 29459 | 181 | 29453 | 404 | 55 | 13.6139 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002compoundhet | het | 78.4773 | 78.8551 | 78.1030 | 69.3467 | 675 | 181 | 667 | 187 | 185 | 98.9305 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5475 | 95.7291 | 99.4363 | 77.3949 | 4057 | 181 | 4057 | 23 | 3 | 13.0435 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | * | 97.6527 | 96.5862 | 98.7430 | 52.4974 | 5121 | 181 | 4949 | 63 | 48 | 76.1905 | |