PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73051-73100 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | het | 82.2726 | 79.2056 | 85.5867 | 66.5243 | 678 | 178 | 671 | 113 | 110 | 97.3451 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | * | 99.3647 | 99.1322 | 99.5983 | 75.0541 | 20334 | 178 | 20330 | 82 | 23 | 28.0488 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.6875 | 19.8198 | 21.6346 | 68.9552 | 44 | 178 | 45 | 163 | 158 | 96.9325 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.2439 | 87.5263 | 99.7608 | 37.2372 | 1249 | 178 | 1251 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | * | 85.9747 | 92.0000 | 80.6901 | 88.9628 | 2047 | 178 | 2783 | 666 | 270 | 40.5405 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | het | 81.0291 | 96.2566 | 69.9614 | 91.9347 | 4577 | 178 | 4530 | 1945 | 87 | 4.4730 | |
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 178 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 178 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 42.3256 | 33.3333 | 57.9618 | 80.3504 | 89 | 178 | 91 | 66 | 2 | 3.0303 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5033 | 98.1180 | 98.8917 | 42.6441 | 9280 | 178 | 9280 | 104 | 101 | 97.1154 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | hetalt | 94.7356 | 90.7915 | 99.0379 | 41.7792 | 1755 | 178 | 1750 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.7294 | 90.7820 | 99.0357 | 41.6612 | 1753 | 178 | 1746 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.7294 | 90.7820 | 99.0357 | 41.6612 | 1753 | 178 | 1746 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.4102 | 96.9993 | 99.8628 | 49.7674 | 5754 | 178 | 5824 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 1.1080 | 0.5587 | 66.6667 | 84.2105 | 1 | 178 | 2 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 83.8326 | 78.4242 | 90.0421 | 57.6603 | 647 | 178 | 642 | 71 | 69 | 97.1831 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 83.8326 | 78.4242 | 90.0421 | 57.6603 | 647 | 178 | 642 | 71 | 69 | 97.1831 | |
| gduggal-bwavard | SNP | * | map_l250_m1_e0 | * | 90.1392 | 97.5353 | 83.7857 | 91.6472 | 7044 | 178 | 6976 | 1350 | 42 | 3.1111 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.3695 | 99.3801 | 84.5540 | 81.4321 | 28534 | 178 | 27026 | 4937 | 134 | 2.7142 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.3695 | 99.3801 | 84.5540 | 81.4321 | 28534 | 178 | 27026 | 4937 | 134 | 2.7142 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1030 | 98.2511 | 99.9699 | 50.6031 | 10000 | 178 | 9949 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6112 | 97.5894 | 99.6546 | 48.0405 | 7206 | 178 | 7214 | 25 | 15 | 60.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | homalt | 67.2189 | 61.4719 | 74.1514 | 83.0230 | 284 | 178 | 284 | 99 | 88 | 88.8889 | |
| eyeh-varpipe | INDEL | * | segdup | * | 93.9572 | 93.0360 | 94.8968 | 96.9158 | 2378 | 178 | 2529 | 136 | 123 | 90.4412 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | homalt | 78.8863 | 65.6371 | 98.8372 | 75.6719 | 340 | 178 | 340 | 4 | 2 | 50.0000 | |
| cchapple-custom | SNP | ti | HG002compoundhet | * | 99.2669 | 98.9816 | 99.5539 | 35.4095 | 17300 | 178 | 17406 | 78 | 64 | 82.0513 | |
| cchapple-custom | INDEL | * | map_siren | * | 97.2258 | 97.5978 | 96.8567 | 81.1585 | 7232 | 178 | 7426 | 241 | 69 | 28.6307 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.6874 | 96.9552 | 98.4307 | 49.3864 | 5668 | 178 | 14614 | 233 | 211 | 90.5579 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.6874 | 96.9552 | 98.4307 | 49.3864 | 5668 | 178 | 14614 | 233 | 211 | 90.5579 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1429 | 90.3366 | 98.2840 | 67.1270 | 1664 | 178 | 1661 | 29 | 28 | 96.5517 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.0428 | 95.6233 | 96.4659 | 70.2238 | 3889 | 178 | 3876 | 142 | 124 | 87.3239 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 43.3697 | 38.1944 | 50.1672 | 54.4901 | 110 | 178 | 300 | 298 | 216 | 72.4832 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 77.8607 | 63.7475 | 100.0000 | 28.1116 | 313 | 178 | 335 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3110 | 86.1669 | 99.3986 | 32.5999 | 1115 | 179 | 1157 | 7 | 7 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.1761 | 91.8265 | 98.7793 | 33.6573 | 2011 | 179 | 2023 | 25 | 22 | 88.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 78.8389 | 67.0350 | 95.6882 | 90.8414 | 364 | 179 | 577 | 26 | 10 | 38.4615 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | homalt | 74.8140 | 66.2900 | 85.8537 | 77.2601 | 352 | 179 | 352 | 58 | 56 | 96.5517 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3256 | 94.9234 | 99.8525 | 39.2800 | 3347 | 179 | 3385 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.3256 | 94.9234 | 99.8525 | 39.2800 | 3347 | 179 | 3385 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m1_e0 | * | 93.0277 | 91.5045 | 94.6026 | 87.5701 | 1928 | 179 | 1928 | 110 | 77 | 70.0000 | |
| jli-custom | SNP | * | map_l250_m2_e0 | het | 97.7202 | 96.5537 | 98.9152 | 87.0848 | 5015 | 179 | 5015 | 55 | 24 | 43.6364 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 179 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7673 | 98.4344 | 97.1092 | 52.3550 | 11254 | 179 | 11287 | 336 | 18 | 5.3571 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | * | 98.4887 | 97.3006 | 99.7063 | 64.1567 | 6452 | 179 | 6450 | 19 | 4 | 21.0526 | |
| hfeng-pmm1 | SNP | ti | map_l100_m0_e0 | * | 99.4038 | 99.1778 | 99.6308 | 67.2084 | 21592 | 179 | 21589 | 80 | 22 | 27.5000 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e1 | * | 99.3663 | 99.1362 | 99.5975 | 75.1263 | 20544 | 179 | 20540 | 83 | 23 | 27.7108 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | het | 82.2937 | 79.0888 | 85.7692 | 65.6236 | 677 | 179 | 669 | 111 | 108 | 97.2973 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 179 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 61.4567 | 89.8526 | 46.6986 | 86.2385 | 1585 | 179 | 1655 | 1889 | 13 | 0.6882 | |
| gduggal-snapvard | SNP | * | func_cds | * | 99.3360 | 99.0138 | 99.6603 | 29.3432 | 17971 | 179 | 17895 | 61 | 23 | 37.7049 | |