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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
73001-73050 / 86044 show all
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.8587
90.8856
99.1952
37.8556
175517619721615
93.7500
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5385
93.3434
99.9601
37.5156
2468176250411
100.0000
raldana-dualsentieonINDELD16_PLUSHG002compoundhet*
94.0691
92.4818
95.7118
34.3777
216517621659796
98.9691
ckim-dragenSNPtvmap_l100_m1_e0*
98.6576
99.2817
98.0414
69.3325
243251762432848645
9.2593
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4715
99.6836
99.2603
56.9862
554551765555641457
13.7681
eyeh-varpipeSNP*HG002compoundhethet
94.4229
98.7586
90.4519
56.9085
14002176584561793
15.0729
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_triTR_11to50het
96.9324
95.1886
98.7412
44.6522
348217644715746
80.7018
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
90.7973
86.7868
95.1964
28.2652
11561765767291281
96.5636
ndellapenna-hhgaINDEL*map_siren*
97.7903
97.6113
97.9700
96.5183
7233177723915078
52.0000
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.3853
98.0620
98.7107
74.2575
8956177895811719
16.2393
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.3853
98.0620
98.7107
74.2575
8956177895811719
16.2393
ltrigg-rtg2SNPtiHG002compoundhet*
99.3879
98.9873
99.7918
33.3089
17301177172553613
36.1111
ltrigg-rtg2SNPtvmap_l250_m2_e0*
96.7626
93.8584
99.8522
79.6388
2705177270240
0.0000
ltrigg-rtg2SNPtvmap_l250_m2_e1*
96.8015
93.9300
99.8540
79.7875
2739177273640
0.0000
mlin-fermikitINDELI1_5map_l100_m1_e0homalt
74.4541
65.8301
85.6784
74.7141
3411773415755
96.4912
mlin-fermikitINDELI1_5map_l125_m0_e0*
57.0815
42.9032
85.2564
80.1020
1331771332321
91.3043
mlin-fermikitINDELI1_5map_l150_m2_e0het
59.3258
42.7184
97.0588
85.5779
13217713242
50.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.8942
97.8828
99.9267
51.0090
8183177817566
100.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.8942
97.8828
99.9267
51.0090
8183177817566
100.0000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.8678
98.2992
99.4430
40.4688
10230177101775724
42.1053
ltrigg-rtg2INDELI6_15*het
98.7987
98.2358
99.3681
45.8366
985617795926115
24.5902
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
84.4600
82.3881
86.6388
62.5342
828177830128125
97.6562
jli-customSNP*map_l250_m1_e0het
97.5495
96.2776
98.8555
86.3033
457817745785323
43.3962
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
81.2423
74.6055
89.1753
53.3280
5201775196362
98.4127
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6504
99.6818
99.6191
61.4842
554541775544321223
10.8491
dgrover-gatkINDELD1_5*het
99.7614
99.7979
99.7250
59.4296
8739717787406241125
51.8672
egarrison-hhgaSNPtvHG002compoundhet*
98.7023
98.0164
99.3979
47.2112
874617787495339
73.5849
egarrison-hhgaSNPtvmap_l100_m2_e1het
99.3132
98.8894
99.7405
65.3943
15761177157614113
31.7073
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.3835
94.9801
99.9116
43.2609
3349177339033
100.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3835
94.9801
99.9116
43.2609
3349177339033
100.0000
dgrover-gatkSNP*map_sirenhomalt
99.8121
99.6791
99.9455
50.4067
54979177549703026
86.6667
ghariani-varprowlINDELI6_15HG002complexvarhet
82.0261
92.4841
73.6930
59.9920
21781772213790772
97.7215
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
1.1095
0.5618
44.1176
64.0212
1177303822
57.8947
gduggal-snapvardSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
98.4953
98.4031
98.5877
57.4464
109071771082015536
23.2258
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
51.3899
95.4252
35.1633
52.7695
3692177371568506821
99.5766
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
16.3986
10.1523
42.6230
80.1303
20177263526
74.2857
asubramanian-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.7949
99.4246
98.1731
74.1057
3058417731383584402
68.8356
cchapple-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9217
96.6692
99.2071
63.7791
513717753804337
86.0465
ciseli-customINDELD1_5map_l150_m2_e0het
72.4320
65.5642
80.9069
93.9773
3371773398021
26.2500
ciseli-customINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
1.1173
0.0000
0.0000
2177000
cchapple-customINDELD16_PLUS*hetalt
0.0000
90.8432
0.0000
0.0000
1756177000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
90.8338
0.0000
0.0000
1754177000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
90.8338
0.0000
0.0000
1754177000
ckim-dragenSNPtvmap_l100_m2_e0*
98.6448
99.2929
98.0051
71.3118
248561772485950645
8.8933
hfeng-pmm3INDEL*HG002complexvarhetalt
97.4347
95.2149
99.7604
68.3328
3522177374897
77.7778
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8837
95.6479
98.1519
65.9512
389017738777364
87.6712
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8111
95.6479
98.0030
65.9757
389017738777963
79.7468
jlack-gatkINDELD16_PLUS*hetalt
94.8361
90.8432
99.1960
37.9289
175617719741615
93.7500
jlack-gatkSNPtimap_l125_m2_e0het
95.3314
99.0570
91.8760
83.3511
18698178186941653140
8.4695
jlack-gatkSNPtimap_l125_m2_e1het
95.3643
99.0674
91.9280
83.3869
18909178189051660140
8.4337