PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
72951-73000 / 86044 show all
ltrigg-rtg2INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.3820
92.0779
98.9320
57.7089
203417520382219
86.3636
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
85.8875
93.5591
79.3786
89.7033
25421752606677208
30.7238
ltrigg-rtg1INDEL*map_sirenhet
97.4658
96.1180
98.8519
76.2761
43331754305503
6.0000
ltrigg-rtg1INDELD16_PLUSHG002compoundhethetalt
94.9583
90.9232
99.3682
22.2073
175317517301111
100.0000
hfeng-pmm1INDELI6_15*het
98.8608
98.2558
99.4734
57.1305
985817598235234
65.3846
hfeng-pmm3SNPtimap_l100_m2_e0het
99.5618
99.4285
99.6954
65.7218
3044717530440939
9.6774
jlack-gatkSNPtimap_l125_m1_e0het
95.2550
99.0419
91.7470
82.2690
18091175180871627140
8.6048
gduggal-snapvardINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.0000
0.0000
0175000
gduggal-snapplatINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.0000
0.0000
0175000
gduggal-snapplatINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200*
10.5305
5.9140
48.0000
69.1358
1117512132
15.3846
gduggal-snapfbINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.0000
0.0000
0175000
gduggal-snapvardINDEL*map_l125_m2_e0*
85.9487
92.0310
80.6206
88.8530
20211752754662269
40.6344
ckim-dragenINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9137
96.7068
99.1511
64.1489
513917551394440
90.9091
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8891
94.9885
98.8674
52.9255
331717533173838
100.0000
ckim-dragenSNP*map_l250_m1_e0*
97.2004
97.5768
96.8269
89.0554
7047175704923129
12.5541
cchapple-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
95.4008
0.0000
0.0000
3630175000
ciseli-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.0000
0.0000
0175000
gduggal-bwafbINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
80.7025
72.6989
90.6863
50.9615
4661751851919
100.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.5231
98.6023
94.5298
62.0425
1234617512304712693
97.3315
egarrison-hhgaSNPtvmap_l100_m1_e0het
99.3126
98.8649
99.7644
63.7472
15242175152423613
36.1111
egarrison-hhgaSNPtvmap_l100_m2_e0het
99.3093
98.8845
99.7379
65.3478
15601176156014113
31.7073
eyeh-varpipeINDEL*map_sirenhet
96.4251
96.0958
96.7566
78.9179
43321764803161108
67.0807
ckim-vqsrSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3676
99.3641
99.3711
65.4796
275021762749217418
10.3448
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
79.2866
71.4286
89.0873
67.9389
4401764495549
89.0909
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
88.3620
96.8555
81.2380
64.5325
5421176594513731329
96.7953
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
68.0000
51.5152
100.0000
41.2979
18717619900
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.0006
75.5556
92.0732
84.2949
544176604524
7.6923
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.0776
92.7182
99.6894
66.0081
2241176224776
85.7143
ckim-vqsrINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1514
90.4452
98.1743
66.8941
166617616673127
87.0968
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
32.7668
34.5725
31.1404
85.7143
931767115740
25.4777
ghariani-varprowlSNP*map_l125_m0_e0homalt
98.5153
97.3778
99.6797
71.5507
653617665362110
47.6190
ghariani-varprowlSNPtvmap_l150_m2_e0*
97.0484
98.4500
95.6860
81.5364
111791761117950490
17.8571
ghariani-varprowlSNPtvmap_l150_m2_e1*
97.0647
98.4698
95.6992
81.5758
113261761132650990
17.6817
gduggal-snapfbINDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
69.4193
63.9344
75.9336
65.0725
312176366116104
89.6552
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0535
95.4837
98.6758
53.2615
372117637265039
78.0000
jmaeng-gatkINDELI16_PLUSHG002compoundhet*
94.0923
91.7872
96.5162
52.1372
196717619677170
98.5915
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
57.0116
54.1667
60.1719
83.5842
208176210139136
97.8417
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.3849
98.2708
96.5148
54.3311
100021769831355280
78.8732
anovak-vgINDELI1_5map_l150_m2_e0het
51.4023
43.0421
63.7931
93.5841
133176148848
9.5238
asubramanian-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9673
98.9982
98.9364
66.6862
173921761739518718
9.6257
ltrigg-rtg2SNPtvmap_l150_m0_e0het
96.6478
93.8094
99.6633
58.3385
2667176266490
0.0000
qzeng-customINDELD1_5map_l150_m1_e0*
84.3978
75.4533
95.7480
93.2533
5411766082723
85.1852
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
75.5473
67.1642
86.3216
61.1351
3601764677464
86.4865
mlin-fermikitINDELD6_15*homalt
93.1078
97.2178
89.3312
62.5603
61501766171737721
97.8290
mlin-fermikitSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.8650
94.1645
97.6281
70.2647
28401762840698
11.5942
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.0202
97.6165
72.2212
39.7852
7208176769329592890
97.6681
jli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.9984
98.8832
99.1137
59.5275
1558417615433138107
77.5362
hfeng-pmm1SNPtimap_l150_m1_e0*
99.3490
99.1071
99.5921
73.5929
19536176195328023
28.7500
hfeng-pmm3SNPtimap_l100_m2_e1het
99.5633
99.4315
99.6955
65.7255
3078417630777949
9.5745
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.8587
90.8856
99.1952
37.8556
175517619721615
93.7500