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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72551-72600 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.3866 | 96.7594 | 96.0167 | 76.6953 | 4837 | 162 | 4821 | 200 | 138 | 69.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.3866 | 96.7594 | 96.0167 | 76.6953 | 4837 | 162 | 4821 | 200 | 138 | 69.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | homalt | 69.0840 | 52.7697 | 100.0000 | 91.9982 | 181 | 162 | 181 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | segdup | het | 93.7455 | 88.9495 | 99.0881 | 97.0073 | 1304 | 162 | 1304 | 12 | 6 | 50.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.3637 | 98.3285 | 94.4759 | 62.6464 | 9530 | 162 | 8500 | 497 | 105 | 21.1268 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.2904 | 99.2602 | 97.3394 | 75.4562 | 21737 | 162 | 21732 | 594 | 582 | 97.9798 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5802 | 99.1091 | 98.0569 | 48.2748 | 18021 | 162 | 18066 | 358 | 80 | 22.3464 | |
| gduggal-bwafb | SNP | ti | HG002compoundhet | * | 98.0359 | 99.0731 | 97.0203 | 40.7433 | 17316 | 162 | 17387 | 534 | 136 | 25.4682 | |
| gduggal-bwaplat | SNP | ti | segdup | homalt | 98.8821 | 97.8281 | 99.9591 | 88.2036 | 7342 | 163 | 7338 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | * | 97.7900 | 96.9257 | 98.6698 | 51.5393 | 5139 | 163 | 4970 | 67 | 50 | 74.6269 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.6210 | 97.6408 | 99.6211 | 50.6118 | 6746 | 163 | 6836 | 26 | 12 | 46.1538 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 48.4670 | 39.4052 | 62.9412 | 75.7489 | 106 | 163 | 107 | 63 | 60 | 95.2381 | |
| ltrigg-rtg1 | SNP | * | map_l250_m0_e0 | het | 94.1134 | 89.1766 | 99.6288 | 83.4358 | 1343 | 163 | 1342 | 5 | 0 | 0.0000 | |
| jli-custom | SNP | ti | * | homalt | 99.9866 | 99.9797 | 99.9934 | 15.9268 | 802875 | 163 | 802870 | 53 | 42 | 79.2453 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.8816 | 95.9653 | 93.8220 | 79.5053 | 3877 | 163 | 3584 | 236 | 208 | 88.1356 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6853 | 98.9657 | 98.4065 | 63.1662 | 15597 | 163 | 15439 | 250 | 223 | 89.2000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 87.7527 | 90.7596 | 84.9385 | 91.1277 | 1601 | 163 | 1658 | 294 | 16 | 5.4422 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.7047 | 98.0586 | 97.3534 | 62.7778 | 8233 | 163 | 8203 | 223 | 199 | 89.2377 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8010 | 94.0359 | 97.6336 | 60.3151 | 2570 | 163 | 2558 | 62 | 59 | 95.1613 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2325 | 90.6751 | 98.0805 | 79.1908 | 1585 | 163 | 1584 | 31 | 13 | 41.9355 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 2.3952 | 0.0000 | 0.0000 | 4 | 163 | 0 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l125_m2_e0 | homalt | 99.4712 | 99.0619 | 99.8839 | 66.1554 | 17212 | 163 | 17212 | 20 | 16 | 80.0000 | |
| astatham-gatk | SNP | * | map_l125_m2_e1 | homalt | 99.4760 | 99.0703 | 99.8850 | 66.1765 | 17369 | 163 | 17369 | 20 | 16 | 80.0000 | |
| asubramanian-gatk | INDEL | D1_5 | * | homalt | 99.6476 | 99.6668 | 99.6283 | 62.3701 | 48763 | 163 | 48779 | 182 | 169 | 92.8571 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 87.1648 | 79.0219 | 97.1787 | 89.3631 | 614 | 163 | 620 | 18 | 2 | 11.1111 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.3360 | 76.6141 | 88.9816 | 53.1299 | 534 | 163 | 533 | 66 | 65 | 98.4848 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 86.5003 | 83.7811 | 89.4019 | 58.5292 | 842 | 163 | 852 | 101 | 62 | 61.3861 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | * | 98.6376 | 97.7430 | 99.5487 | 87.7148 | 7059 | 163 | 7059 | 32 | 15 | 46.8750 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.9007 | 94.0899 | 99.8846 | 27.3413 | 2595 | 163 | 2596 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | * | HG002complexvar | homalt | 99.9653 | 99.9435 | 99.9872 | 19.8551 | 288411 | 163 | 288386 | 37 | 35 | 94.5946 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.3483 | 83.7325 | 95.7714 | 64.0509 | 839 | 163 | 838 | 37 | 35 | 94.5946 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | * | 98.9475 | 98.7149 | 99.1811 | 72.7585 | 12598 | 164 | 12596 | 104 | 70 | 67.3077 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | homalt | 97.7764 | 95.8439 | 99.7884 | 71.1912 | 3782 | 164 | 3772 | 8 | 6 | 75.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 61.3598 | 97.0699 | 44.8576 | 61.9828 | 5433 | 164 | 5465 | 6718 | 6663 | 99.1813 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 8.3799 | 0.0000 | 0.0000 | 15 | 164 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.0796 | 97.3480 | 87.3522 | 68.3694 | 6020 | 164 | 5912 | 856 | 19 | 2.2196 | |
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 164 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | * | 83.8096 | 78.5059 | 89.8817 | 94.3466 | 599 | 164 | 684 | 77 | 18 | 23.3766 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m1_e0 | het | 81.0099 | 78.8932 | 83.2432 | 92.8928 | 613 | 164 | 616 | 124 | 3 | 2.4194 | |
| ghariani-varprowl | SNP | tv | map_l100_m0_e0 | * | 97.0755 | 98.5204 | 95.6724 | 76.1776 | 10920 | 164 | 10921 | 494 | 87 | 17.6113 | |
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 164 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.6118 | 96.7950 | 81.7043 | 50.5663 | 4953 | 164 | 4957 | 1110 | 1047 | 94.3243 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7792 | 98.5236 | 99.0362 | 55.6925 | 10944 | 164 | 10892 | 106 | 23 | 21.6981 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 89.8860 | 81.7168 | 99.8700 | 38.3320 | 733 | 164 | 768 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | * | homalt | 99.5485 | 99.8690 | 99.2301 | 59.0290 | 125008 | 164 | 125021 | 970 | 941 | 97.0103 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5168 | 96.7193 | 98.3276 | 70.0415 | 4835 | 164 | 4821 | 82 | 63 | 76.8293 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5168 | 96.7193 | 98.3276 | 70.0415 | 4835 | 164 | 4821 | 82 | 63 | 76.8293 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.7964 | 0.0000 | 0.0000 | 3 | 164 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 86.3919 | 88.4669 | 84.4120 | 88.2444 | 1258 | 164 | 1213 | 224 | 72 | 32.1429 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | het | 93.0274 | 98.3804 | 88.2269 | 82.2633 | 9962 | 164 | 9937 | 1326 | 63 | 4.7511 | |