PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71501-71550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.9013 | 72.7088 | 99.1667 | 31.9471 | 357 | 134 | 357 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l150_m1_e0 | homalt | 98.9885 | 98.1711 | 99.8196 | 71.5110 | 7193 | 134 | 7193 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | homalt | 99.0272 | 98.2405 | 99.8266 | 73.7644 | 7482 | 134 | 7482 | 13 | 10 | 76.9231 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | het | 85.2845 | 82.4607 | 88.3085 | 93.5494 | 630 | 134 | 710 | 94 | 20 | 21.2766 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | homalt | 83.5293 | 73.6739 | 96.4286 | 89.2418 | 375 | 134 | 405 | 15 | 1 | 6.6667 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e1 | homalt | 82.8857 | 72.7642 | 96.2779 | 92.5618 | 358 | 134 | 388 | 15 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | segdup | * | 98.7367 | 98.4294 | 99.0458 | 94.5607 | 8398 | 134 | 8408 | 81 | 13 | 16.0494 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4767 | 93.8476 | 95.1143 | 74.6842 | 2044 | 134 | 1830 | 94 | 84 | 89.3617 | |
| hfeng-pmm1 | SNP | * | * | homalt | 99.9908 | 99.9886 | 99.9929 | 18.0449 | 1180027 | 134 | 1180013 | 84 | 56 | 66.6667 | |
| hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | * | 99.6055 | 99.4531 | 99.7584 | 64.1006 | 24367 | 134 | 24363 | 59 | 17 | 28.8136 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | * | 99.6119 | 99.4647 | 99.7596 | 65.8235 | 24899 | 134 | 24895 | 60 | 17 | 28.3333 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7765 | 93.8813 | 99.8559 | 30.0168 | 2056 | 134 | 2079 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.9847 | 92.4337 | 99.8195 | 35.5314 | 1637 | 134 | 1659 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | * | 98.7643 | 98.7911 | 98.7375 | 67.3276 | 10950 | 134 | 10949 | 140 | 63 | 45.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.6481 | 99.5697 | 99.7266 | 69.7354 | 31009 | 134 | 31007 | 85 | 34 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.6481 | 99.5697 | 99.7266 | 69.7354 | 31009 | 134 | 31007 | 85 | 34 | 40.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | hetalt | 96.3126 | 93.0160 | 99.8515 | 37.8079 | 1798 | 135 | 2017 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.3719 | 92.9979 | 100.0000 | 26.0481 | 1793 | 135 | 1905 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3087 | 93.0088 | 99.8513 | 37.7661 | 1796 | 135 | 2014 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3087 | 93.0088 | 99.8513 | 37.7661 | 1796 | 135 | 2014 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.2352 | 96.6493 | 99.8739 | 41.6507 | 3894 | 135 | 3961 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 33.1178 | 59.0909 | 23.0058 | 50.3159 | 195 | 135 | 199 | 666 | 661 | 99.2492 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | * | 53.5373 | 50.9091 | 56.4516 | 88.7681 | 140 | 135 | 140 | 108 | 64 | 59.2593 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 34.7933 | 24.1573 | 62.1622 | 74.0351 | 43 | 135 | 46 | 28 | 27 | 96.4286 | |
| ckim-gatk | SNP | * | HG002compoundhet | het | 99.3772 | 99.0478 | 99.7088 | 46.6510 | 14043 | 135 | 14041 | 41 | 28 | 68.2927 | |
| cchapple-custom | SNP | tv | map_l100_m0_e0 | homalt | 98.2136 | 96.4899 | 100.0000 | 59.1024 | 3711 | 135 | 3709 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5364 | 99.2047 | 99.8702 | 65.5442 | 16840 | 135 | 16932 | 22 | 12 | 54.5455 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5364 | 99.2047 | 99.8702 | 65.5442 | 16840 | 135 | 16932 | 22 | 12 | 54.5455 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.5575 | 98.0766 | 99.0431 | 61.4154 | 6884 | 135 | 6831 | 66 | 45 | 68.1818 | |
| gduggal-bwavard | INDEL | D6_15 | map_siren | * | 75.5000 | 73.4774 | 77.6371 | 87.1753 | 374 | 135 | 368 | 106 | 86 | 81.1321 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | het | 95.9196 | 93.9597 | 97.9629 | 82.4460 | 2100 | 135 | 2164 | 45 | 7 | 15.5556 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.3568 | 80.3493 | 91.0299 | 77.5037 | 552 | 135 | 548 | 54 | 32 | 59.2593 | |
| qzeng-custom | INDEL | I6_15 | * | homalt | 92.4648 | 97.8362 | 87.6525 | 43.2864 | 6104 | 135 | 6105 | 860 | 457 | 53.1395 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3739 | 97.4595 | 99.3056 | 60.7094 | 5179 | 135 | 5148 | 36 | 21 | 58.3333 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.7592 | 93.1507 | 94.3756 | 73.2357 | 1836 | 135 | 1829 | 109 | 67 | 61.4679 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.7592 | 93.1507 | 94.3756 | 73.2357 | 1836 | 135 | 1829 | 109 | 67 | 61.4679 | |
| qzeng-custom | INDEL | * | map_l100_m0_e0 | homalt | 82.8374 | 73.4774 | 94.9301 | 85.9563 | 374 | 135 | 543 | 29 | 6 | 20.6897 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6632 | 99.5223 | 99.8044 | 57.7539 | 28125 | 135 | 28578 | 56 | 39 | 69.6429 | |
| astatham-gatk | INDEL | D16_PLUS | * | * | 97.8775 | 98.0100 | 97.7454 | 70.7802 | 6649 | 135 | 6633 | 153 | 104 | 67.9739 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 90.3207 | 83.7349 | 98.0309 | 89.6582 | 695 | 135 | 697 | 14 | 1 | 7.1429 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ckim-vqsr | INDEL | I6_15 | HG002complexvar | * | 98.1251 | 97.1828 | 99.0859 | 57.0293 | 4657 | 135 | 4661 | 43 | 42 | 97.6744 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.7593 | 76.8439 | 97.0149 | 63.3307 | 448 | 135 | 455 | 14 | 12 | 85.7143 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.8657 | 94.0053 | 99.9057 | 45.5875 | 2117 | 135 | 2119 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3979 | 96.6584 | 94.1699 | 79.6348 | 3905 | 135 | 3602 | 223 | 191 | 85.6502 | |
| dgrover-gatk | SNP | * | map_l100_m1_e0 | homalt | 99.7105 | 99.5001 | 99.9219 | 58.2002 | 26868 | 135 | 26868 | 21 | 16 | 76.1905 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_siren | * | 9.6970 | 5.5944 | 36.3636 | 92.6174 | 8 | 135 | 8 | 14 | 6 | 42.8571 | |