PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71201-71250 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.0808 | 91.0689 | 99.4624 | 87.4506 | 1295 | 127 | 1295 | 7 | 3 | 42.8571 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8035 | 95.8873 | 99.7978 | 64.0929 | 2961 | 127 | 2961 | 6 | 4 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 89.7564 | 96.6277 | 83.7975 | 65.1703 | 3639 | 127 | 3641 | 704 | 688 | 97.7273 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 89.7564 | 96.6277 | 83.7975 | 65.1703 | 3639 | 127 | 3641 | 704 | 688 | 97.7273 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | het | 61.6175 | 85.1636 | 48.2714 | 46.2388 | 729 | 127 | 1480 | 1586 | 1544 | 97.3518 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | het | 97.7952 | 96.0971 | 99.5543 | 88.3585 | 3127 | 127 | 3127 | 14 | 6 | 42.8571 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.9189 | 96.4670 | 97.3750 | 70.9358 | 3495 | 128 | 3487 | 94 | 86 | 91.4894 | |
| raldana-dualsentieon | INDEL | * | map_siren | * | 98.6998 | 98.2726 | 99.1307 | 80.1633 | 7282 | 128 | 7298 | 64 | 16 | 25.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 61.0689 | 88.2353 | 46.6928 | 58.7927 | 960 | 128 | 953 | 1088 | 1026 | 94.3015 | |
| ckim-dragen | INDEL | D16_PLUS | * | hetalt | 96.2097 | 93.3782 | 99.2184 | 39.1860 | 1805 | 128 | 2031 | 16 | 16 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.2055 | 93.3713 | 99.2172 | 39.1486 | 1803 | 128 | 2028 | 16 | 16 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.2055 | 93.3713 | 99.2172 | 39.1486 | 1803 | 128 | 2028 | 16 | 16 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m0_e0 | * | 57.2924 | 58.7097 | 55.9420 | 90.7507 | 182 | 128 | 193 | 152 | 98 | 64.4737 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 75.1094 | 82.2222 | 69.1293 | 80.3287 | 592 | 128 | 786 | 351 | 146 | 41.5954 | |
| anovak-vg | SNP | ti | map_l250_m0_e0 | homalt | 82.3486 | 70.6422 | 98.7055 | 93.2724 | 308 | 128 | 305 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2882 | 97.8105 | 96.7714 | 71.7102 | 5718 | 128 | 5665 | 189 | 174 | 92.0635 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2882 | 97.8105 | 96.7714 | 71.7102 | 5718 | 128 | 5665 | 189 | 174 | 92.0635 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0571 | 98.8804 | 97.2473 | 44.6639 | 11305 | 128 | 11305 | 320 | 3 | 0.9375 | |
| astatham-gatk | INDEL | I6_15 | * | het | 98.9793 | 98.7242 | 99.2358 | 59.2368 | 9905 | 128 | 9869 | 76 | 54 | 71.0526 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e1 | het | 74.5562 | 59.6215 | 99.4737 | 96.5316 | 189 | 128 | 189 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | het | 98.1591 | 98.7359 | 97.5891 | 74.7511 | 9998 | 128 | 9998 | 247 | 44 | 17.8138 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | het | 98.2005 | 98.7742 | 97.6335 | 76.4784 | 10314 | 128 | 10314 | 250 | 45 | 18.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | het | 98.2193 | 98.7871 | 97.6581 | 76.5519 | 10425 | 128 | 10425 | 250 | 45 | 18.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.1567 | 70.5747 | 92.7492 | 83.3752 | 307 | 128 | 307 | 24 | 4 | 16.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 73.9449 | 73.7705 | 74.1201 | 54.7329 | 360 | 128 | 358 | 125 | 125 | 100.0000 | |
| gduggal-bwavard | SNP | ti | func_cds | * | 99.3703 | 99.0716 | 99.6707 | 28.1478 | 13659 | 128 | 13622 | 45 | 15 | 33.3333 | |
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | * | 96.0095 | 97.2046 | 94.8434 | 90.8840 | 4451 | 128 | 4451 | 242 | 52 | 21.4876 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e1 | het | 82.7367 | 96.1200 | 72.6248 | 92.6041 | 3171 | 128 | 3157 | 1190 | 66 | 5.5462 | |
| ghariani-varprowl | INDEL | * | segdup | hetalt | 0.0000 | 1.5385 | 0.0000 | 0.0000 | 2 | 128 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 40.7407 | 25.5814 | 100.0000 | 84.1549 | 44 | 128 | 45 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | * | 99.0843 | 98.9362 | 99.2329 | 79.6567 | 11904 | 128 | 11901 | 92 | 18 | 19.5652 | |
| jlack-gatk | SNP | ti | map_l150_m1_e0 | homalt | 99.0574 | 98.2530 | 99.8751 | 68.9978 | 7199 | 128 | 7199 | 9 | 7 | 77.7778 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.4914 | 70.8428 | 98.7245 | 40.6959 | 311 | 128 | 387 | 5 | 4 | 80.0000 | |
| dgrover-gatk | SNP | * | map_l250_m1_e0 | * | 98.3434 | 98.2276 | 98.4594 | 89.8378 | 7094 | 128 | 7094 | 111 | 29 | 26.1261 | |
| dgrover-gatk | SNP | ti | map_l125_m1_e0 | het | 99.2150 | 99.2992 | 99.1308 | 75.9575 | 18138 | 128 | 18134 | 159 | 33 | 20.7547 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 40.7407 | 25.5814 | 100.0000 | 84.1549 | 44 | 128 | 45 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | * | het | 99.0350 | 98.8958 | 99.1747 | 58.3418 | 11464 | 128 | 11416 | 95 | 84 | 88.4211 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | * | 98.3796 | 97.4783 | 99.2976 | 86.9545 | 4948 | 128 | 4948 | 35 | 18 | 51.4286 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | het | 97.4370 | 95.9481 | 98.9728 | 64.1950 | 3031 | 128 | 2987 | 31 | 14 | 45.1613 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 86.9857 | 77.8731 | 98.5138 | 67.0860 | 454 | 129 | 464 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | * | 92.4162 | 91.0354 | 93.8395 | 90.8085 | 1310 | 129 | 1310 | 86 | 55 | 63.9535 | |
| jpowers-varprowl | INDEL | * | segdup | hetalt | 0.0000 | 0.7692 | 0.0000 | 0.0000 | 1 | 129 | 0 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.8792 | 96.9561 | 94.8260 | 86.0126 | 4109 | 129 | 4142 | 226 | 11 | 4.8673 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | * | 97.3892 | 95.1266 | 99.7620 | 81.0778 | 2518 | 129 | 2515 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | HG002compoundhet | het | 20.0258 | 84.8235 | 11.3531 | 68.3156 | 721 | 129 | 709 | 5536 | 5451 | 98.4646 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 68.8039 | 91.6288 | 55.0827 | 70.2532 | 1412 | 129 | 1398 | 1140 | 1083 | 95.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m2_e1 | * | 91.4742 | 97.4586 | 86.1821 | 92.2577 | 4947 | 129 | 4921 | 789 | 28 | 3.5488 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.8865 | 95.8225 | 93.9686 | 74.8872 | 2959 | 129 | 2929 | 188 | 79 | 42.0213 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.1348 | 47.7733 | 97.5410 | 89.6698 | 118 | 129 | 119 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | segdup | hetalt | 0.0000 | 0.7692 | 0.0000 | 0.0000 | 1 | 129 | 0 | 0 | 0 | ||