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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1417 1418 1419 1420 1421 1422 1423 1424 1425 ... 1720 1721 » 71001-71050 / 86044 show all
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4163	93.6820	99.3151	38.7290	1809	122	2030	14	14	100.0000
asubramanian-gatk	INDEL	I1_5	map_l125_m2_e1	het	84.9321	75.9843	96.2687	92.4165	386	122	387	15	1	6.6667
astatham-gatk	SNP	ti	map_l100_m2_e1	homalt	99.6312	99.3403	99.9239	59.5512	18372	122	18372	14	13	92.8571
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	68.9415	78.6340	61.3762	40.0333	449	122	1106	696	623	89.5115
jpowers-varprowl	INDEL	*	map_l150_m2_e0	*	92.6847	91.3352	94.0746	90.7989	1286	122	1286	81	52	64.1975
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.1651	96.1994	98.1505	57.1994	3088	122	3078	58	57	98.2759
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.7613	94.2669	95.2609	72.9999	2006	122	1990	99	89	89.8990
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7772	92.5409	99.2481	35.3886	1526	123	1716	13	13	100.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.6852	99.1559	98.2189	80.5400	14448	123	14448	262	15	5.7252
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.6852	99.1559	98.2189	80.5400	14448	123	14448	262	15	5.7252
jpowers-varprowl	INDEL	*	map_l100_m1_e0	hetalt	0.0000	0.8065	0.0000	0.0000	1	123	0	0	0
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	95.1323	91.9608	98.5304	80.4728	1407	123	1408	21	9	42.8571
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	95.1323	91.9608	98.5304	80.4728	1407	123	1408	21	9	42.8571
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.5807	99.2754	99.8880	68.6524	16852	123	16941	19	8	42.1053
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.5807	99.2754	99.8880	68.6524	16852	123	16941	19	8	42.1053
ghariani-varprowl	INDEL	*	map_l100_m1_e0	hetalt	0.0000	0.8065	0.0000	0.0000	1	123	0	0	0
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	88.0250	87.1204	88.9485	79.8268	832	123	829	103	98	95.1456
ghariani-varprowl	SNP	tv	map_siren	homalt	99.3038	99.2865	99.3211	57.8404	17117	123	17117	117	71	60.6838
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	28.4923	93.0272	16.8223	79.7480	1641	123	1747	8638	126	1.4587
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	67.6742	98.1523	51.6392	81.2351	6534	123	6647	6225	139	2.2329
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	20.6825	16.8919	26.6667	71.6981	25	123	20	55	29	52.7273
gduggal-snapplat	SNP	*	func_cds	*	99.4703	99.3223	99.6187	31.7106	18027	123	18027	69	5	7.2464
hfeng-pmm2	SNP	*	map_l125_m0_e0	het	98.6818	99.0287	98.3373	78.8543	12541	123	12538	212	20	9.4340
ltrigg-rtg2	SNP	ti	map_l250_m0_e0	*	95.0820	91.0219	99.5211	84.7102	1247	123	1247	6	3	50.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2771	98.9642	99.5919	45.6545	11752	123	11714	48	17	35.4167
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.1027	96.8437	99.3947	53.9673	3774	123	3777	23	15	65.2174
gduggal-bwaplat	INDEL	I16_PLUS	HG002complexvar	hetalt	77.0889	63.2836	98.5981	68.1548	212	123	211	3	3	100.0000
gduggal-bwavard	INDEL	*	map_l100_m2_e0	hetalt	0.0000	1.6000	0.0000	0.0000	2	123	0	0	0
gduggal-bwavard	INDEL	D16_PLUS	HG002complexvar	het	81.5892	88.8889	75.3974	65.5091	984	123	996	325	263	80.9231
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	85.8715	81.4199	90.8380	65.8788	539	123	813	82	43	52.4390
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	93.2309	99.3718	87.8049	80.7052	19456	123	18720	2600	87	3.3462
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	93.2309	99.3718	87.8049	80.7052	19456	123	18720	2600	87	3.3462
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	93.9516	98.5298	89.7799	55.6361	8243	123	8240	938	934	99.5736
raldana-dualsentieon	SNP	*	map_l250_m2_e0	het	97.5099	97.6319	97.3881	89.3936	5071	123	5071	136	3	2.2059
rpoplin-dv42	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	86.7813	76.7925	99.7573	48.6284	407	123	411	1	1	100.0000
anovak-vg	INDEL	D1_5	map_l150_m2_e1	*	82.1438	84.1902	80.1944	89.9891	655	123	660	163	64	39.2638
ckim-dragen	SNP	tv	map_l100_m0_e0	*	98.2217	98.8903	97.5621	72.7546	10961	123	10965	274	31	11.3139
ckim-dragen	SNP	ti	map_l150_m0_e0	*	97.7765	98.4353	97.1264	80.6352	7738	123	7740	229	28	12.2271
ckim-isaac	INDEL	I1_5	map_l125_m1_e0	homalt	76.5478	62.3853	99.0291	78.6307	204	123	204	2	0	0.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.8985	99.2195	98.5796	63.0301	15637	123	15477	223	202	90.5830
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6427	99.5150	99.7707	54.4892	25236	123	25236	58	45	77.5862
egarrison-hhga	SNP	*	map_siren	homalt	99.8639	99.7770	99.9510	53.4112	55033	123	55033	27	24	88.8889
dgrover-gatk	SNP	*	map_l125_m0_e0	het	98.7051	99.0287	98.3836	80.4812	12541	123	12538	206	40	19.4175
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	92.5220	86.1761	99.8768	41.7921	773	124	811	1	1	100.0000
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.3899	96.9496	99.8736	43.2587	3941	124	3951	5	2	40.0000
ckim-vqsr	INDEL	*	map_l100_m2_e0	*	97.1833	96.6423	97.7304	89.4395	3569	124	3574	83	16	19.2771
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	94.8534	92.9705	96.8142	85.5904	1640	124	1641	54	22	40.7407
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4570	99.2695	99.6453	71.3824	16851	124	16855	60	48	80.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	71.9457	56.1837	100.0000	55.9889	159	124	158	0	0

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