PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70801-70850 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | map_l125_m0_e0 | het | 97.4340 | 98.5598 | 96.3335 | 79.4732 | 8144 | 119 | 8145 | 310 | 27 | 8.7097 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 4.8000 | 0.0000 | 0.0000 | 6 | 119 | 0 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1847 | 94.5662 | 99.9523 | 34.2023 | 2071 | 119 | 2094 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.6573 | 96.0544 | 99.3146 | 65.3032 | 2897 | 119 | 2898 | 20 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0722 | 99.3449 | 98.8011 | 64.3152 | 18047 | 119 | 18047 | 219 | 203 | 92.6941 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0722 | 99.3449 | 98.8011 | 64.3152 | 18047 | 119 | 18047 | 219 | 203 | 92.6941 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4459 | 98.9979 | 99.8981 | 48.0313 | 11756 | 119 | 11761 | 12 | 6 | 50.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.1684 | 89.2210 | 99.6967 | 86.2237 | 985 | 119 | 986 | 3 | 1 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6772 | 97.5494 | 99.8314 | 64.0612 | 4737 | 119 | 4737 | 8 | 5 | 62.5000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.0167 | 98.2183 | 71.8900 | 39.0410 | 6560 | 119 | 6900 | 2698 | 2648 | 98.1468 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8377 | 98.6970 | 98.9788 | 83.4427 | 9014 | 119 | 9014 | 93 | 10 | 10.7527 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8377 | 98.6970 | 98.9788 | 83.4427 | 9014 | 119 | 9014 | 93 | 10 | 10.7527 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3197 | 98.9592 | 99.6829 | 37.2866 | 11314 | 119 | 11317 | 36 | 17 | 47.2222 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 85.6175 | 75.6148 | 98.6702 | 63.9501 | 369 | 119 | 371 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | het | 85.6476 | 75.5144 | 98.9218 | 88.5352 | 367 | 119 | 367 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | het | 86.0068 | 76.0563 | 98.9529 | 89.5285 | 378 | 119 | 378 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | * | 97.1981 | 96.6815 | 97.7202 | 88.7691 | 3467 | 119 | 3472 | 81 | 16 | 19.7531 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | * | 90.9201 | 97.4012 | 85.2478 | 91.8224 | 4460 | 119 | 4438 | 768 | 26 | 3.3854 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | het | 91.7382 | 98.3591 | 85.9524 | 85.7991 | 7133 | 119 | 7116 | 1163 | 44 | 3.7833 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | het | 91.8305 | 98.3805 | 86.0982 | 85.8449 | 7229 | 119 | 7209 | 1164 | 45 | 3.8660 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.5413 | 96.7290 | 88.7011 | 66.3212 | 3519 | 119 | 3517 | 448 | 445 | 99.3304 | |
| gduggal-bwafb | SNP | * | map_l150_m1_e0 | homalt | 99.3896 | 98.9444 | 99.8389 | 72.9039 | 11154 | 119 | 11154 | 18 | 11 | 61.1111 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | homalt | 57.9505 | 40.7960 | 100.0000 | 95.3803 | 82 | 119 | 82 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e1 | homalt | 58.8235 | 41.6667 | 100.0000 | 95.3168 | 85 | 119 | 85 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | HG002compoundhet | homalt | 86.6968 | 82.6531 | 91.1565 | 55.5556 | 567 | 119 | 536 | 52 | 47 | 90.3846 | |
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | het | 60.4651 | 43.3333 | 100.0000 | 99.0381 | 91 | 119 | 91 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | het | 60.7261 | 43.6019 | 100.0000 | 99.0542 | 92 | 119 | 92 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6259 | 94.6129 | 98.7264 | 59.9168 | 2090 | 119 | 2093 | 27 | 24 | 88.8889 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.9657 | 75.7143 | 94.2356 | 75.6856 | 371 | 119 | 376 | 23 | 20 | 86.9565 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5300 | 97.9644 | 99.1021 | 62.8102 | 5727 | 119 | 5629 | 51 | 17 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5300 | 97.9644 | 99.1021 | 62.8102 | 5727 | 119 | 5629 | 51 | 17 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | * | homalt | 94.3162 | 92.3767 | 96.3390 | 45.5318 | 1442 | 119 | 1421 | 54 | 53 | 98.1481 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.6644 | 98.0498 | 99.2867 | 71.5861 | 5983 | 119 | 5985 | 43 | 7 | 16.2791 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7095 | 99.5789 | 99.8404 | 58.9584 | 28141 | 119 | 28144 | 45 | 19 | 42.2222 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8238 | 92.6407 | 99.2335 | 33.1757 | 1498 | 119 | 1683 | 13 | 13 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m1_e0 | * | 92.4886 | 91.1061 | 93.9137 | 90.2023 | 1219 | 119 | 1219 | 79 | 51 | 64.5570 | |
| gduggal-snapvard | INDEL | * | segdup | het | 85.9532 | 91.8827 | 80.7426 | 95.9123 | 1347 | 119 | 1631 | 389 | 289 | 74.2931 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | het | 25.8366 | 16.7832 | 56.0976 | 90.6818 | 24 | 119 | 23 | 18 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.4344 | 96.9479 | 97.9258 | 61.8911 | 3780 | 119 | 3777 | 80 | 36 | 45.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.6404 | 92.1400 | 97.2803 | 85.0563 | 1395 | 119 | 1395 | 39 | 17 | 43.5897 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.4282 | 87.3673 | 76.2452 | 66.4309 | 823 | 119 | 796 | 248 | 247 | 99.5968 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 89.6574 | 81.4353 | 99.7264 | 37.3608 | 522 | 119 | 729 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | * | HG002compoundhet | homalt | 98.8868 | 98.8963 | 98.8772 | 42.3069 | 10663 | 119 | 8190 | 93 | 74 | 79.5699 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.7826 | 98.8983 | 96.6918 | 85.1220 | 10682 | 119 | 10756 | 368 | 69 | 18.7500 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.0062 | 74.2424 | 99.4203 | 29.8780 | 343 | 119 | 343 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | het | 58.0395 | 41.0891 | 98.7952 | 83.7573 | 83 | 119 | 82 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 84.9655 | 76.8482 | 95.0000 | 94.5186 | 395 | 119 | 437 | 23 | 19 | 82.6087 | |
| qzeng-custom | INDEL | D1_5 | map_siren | homalt | 94.1879 | 89.8116 | 99.0126 | 74.9663 | 1049 | 119 | 1103 | 11 | 11 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5900 | 96.6582 | 98.5399 | 68.6164 | 3442 | 119 | 3442 | 51 | 43 | 84.3137 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.6486 | 83.4722 | 99.1749 | 87.8994 | 601 | 119 | 601 | 5 | 3 | 60.0000 | |