PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70551-70600 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 90.3658 | 89.3697 | 91.3843 | 78.2572 | 950 | 113 | 944 | 89 | 83 | 93.2584 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 87.1538 | 78.6792 | 97.6744 | 47.9419 | 417 | 113 | 420 | 10 | 9 | 90.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | * | 32.6087 | 20.9790 | 73.1707 | 91.1638 | 30 | 113 | 30 | 11 | 6 | 54.5455 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.7286 | 91.6605 | 89.8154 | 74.1565 | 1242 | 113 | 1314 | 149 | 130 | 87.2483 | |
| hfeng-pmm3 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.6531 | 97.6280 | 99.6999 | 67.5388 | 4651 | 113 | 4651 | 14 | 1 | 7.1429 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8613 | 87.6232 | 98.7654 | 88.2880 | 800 | 113 | 800 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.9089 | 96.2533 | 99.6225 | 65.2640 | 2903 | 113 | 2903 | 11 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | * | 99.4714 | 99.2945 | 99.6491 | 69.3117 | 15903 | 113 | 15901 | 56 | 16 | 28.5714 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | * | 99.4866 | 99.3147 | 99.6592 | 71.0071 | 16376 | 113 | 16374 | 56 | 16 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9970 | 93.0118 | 99.1803 | 34.2571 | 1504 | 113 | 1694 | 14 | 14 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 45.3431 | 47.6852 | 43.2203 | 58.3774 | 103 | 113 | 102 | 134 | 129 | 96.2687 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | homalt | 99.6288 | 99.3708 | 99.8881 | 54.6776 | 17847 | 113 | 17852 | 20 | 19 | 95.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | het | 84.6379 | 80.8799 | 88.7622 | 92.9498 | 478 | 113 | 545 | 69 | 16 | 23.1884 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | * | 83.1468 | 77.2177 | 90.0621 | 94.3416 | 383 | 113 | 435 | 48 | 13 | 27.0833 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.4371 | 20.4225 | 78.7879 | 49.2308 | 29 | 113 | 26 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | * | 82.5979 | 77.6680 | 88.1960 | 95.0708 | 393 | 113 | 396 | 53 | 2 | 3.7736 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | * | 88.9679 | 94.1723 | 84.3087 | 85.8664 | 1826 | 113 | 2305 | 429 | 173 | 40.3263 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 59.1474 | 45.9330 | 83.0357 | 59.5668 | 96 | 113 | 93 | 19 | 17 | 89.4737 | |
| qzeng-custom | INDEL | * | map_l250_m2_e0 | * | 75.8372 | 65.8610 | 89.3750 | 97.9118 | 218 | 113 | 286 | 34 | 17 | 50.0000 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | * | 75.9087 | 66.0661 | 89.1975 | 97.9280 | 220 | 113 | 289 | 35 | 17 | 48.5714 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.7010 | 93.8654 | 97.6098 | 62.3325 | 1729 | 113 | 1756 | 43 | 13 | 30.2326 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.6787 | 97.6320 | 99.7480 | 46.7338 | 4659 | 113 | 4750 | 12 | 12 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | * | 97.3112 | 96.9402 | 97.6852 | 97.7103 | 3580 | 113 | 3587 | 85 | 38 | 44.7059 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002complexvar | homalt | 98.4078 | 98.9338 | 97.8875 | 56.5863 | 10485 | 113 | 10472 | 226 | 169 | 74.7788 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0812 | 94.2669 | 93.8962 | 73.0279 | 1858 | 113 | 1846 | 120 | 112 | 93.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.0812 | 94.2669 | 93.8962 | 73.0279 | 1858 | 113 | 1846 | 120 | 112 | 93.3333 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002complexvar | hetalt | 95.1115 | 90.6787 | 100.0000 | 54.5670 | 1109 | 114 | 1149 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | * | 99.4888 | 99.3156 | 99.6626 | 71.0607 | 16543 | 114 | 16541 | 56 | 16 | 28.5714 | |
| hfeng-pmm3 | SNP | ti | map_l150_m1_e0 | * | 99.4898 | 99.4217 | 99.5579 | 74.0428 | 19598 | 114 | 19594 | 87 | 14 | 16.0920 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9404 | 91.4862 | 96.5300 | 83.1405 | 1225 | 114 | 1224 | 44 | 31 | 70.4545 | |
| ltrigg-rtg1 | SNP | * | map_siren | homalt | 99.8648 | 99.7933 | 99.9364 | 52.2080 | 55042 | 114 | 55031 | 35 | 31 | 88.5714 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4474 | 98.9552 | 99.9444 | 60.4265 | 10797 | 114 | 10794 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.6448 | 88.6228 | 97.0492 | 64.9425 | 888 | 114 | 888 | 27 | 24 | 88.8889 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e0 | het | 87.1650 | 97.8052 | 78.6127 | 93.0154 | 5080 | 114 | 5032 | 1369 | 34 | 2.4836 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 58.9266 | 44.3902 | 87.6190 | 88.5120 | 91 | 114 | 92 | 13 | 12 | 92.3077 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 58.9266 | 44.3902 | 87.6190 | 88.5120 | 91 | 114 | 92 | 13 | 12 | 92.3077 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 77.6923 | 63.9241 | 99.0196 | 81.1460 | 202 | 114 | 202 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | segdup | het | 98.3560 | 97.8438 | 98.8736 | 96.0991 | 5173 | 114 | 5179 | 59 | 6 | 10.1695 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | het | 83.1185 | 71.8519 | 98.5755 | 24.7427 | 291 | 114 | 1730 | 25 | 25 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 41.7658 | 28.7500 | 76.3158 | 69.6000 | 46 | 114 | 58 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.4458 | 98.9378 | 97.9586 | 49.7551 | 10618 | 114 | 10653 | 222 | 58 | 26.1261 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | * | 98.0737 | 98.2808 | 97.8675 | 77.6619 | 6517 | 114 | 6517 | 142 | 29 | 20.4225 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | het | 97.9956 | 98.4280 | 97.5670 | 79.8007 | 7138 | 114 | 7138 | 178 | 33 | 18.5393 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | het | 98.0150 | 98.4486 | 97.5853 | 79.8450 | 7234 | 114 | 7234 | 179 | 33 | 18.4358 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 69.1892 | 52.8926 | 100.0000 | 93.1660 | 128 | 114 | 128 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l125_m1_e0 | homalt | 99.6085 | 99.3256 | 99.8929 | 63.9547 | 16791 | 114 | 16791 | 18 | 13 | 72.2222 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | * | 99.2231 | 99.2882 | 99.1581 | 73.2603 | 15902 | 114 | 15900 | 135 | 27 | 20.0000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e0 | * | 99.2454 | 99.3086 | 99.1822 | 74.7468 | 16375 | 114 | 16373 | 135 | 27 | 20.0000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e1 | * | 99.2530 | 99.3156 | 99.1905 | 74.7864 | 16543 | 114 | 16541 | 135 | 27 | 20.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 82.9391 | 77.0624 | 89.7862 | 73.3037 | 383 | 114 | 378 | 43 | 27 | 62.7907 | |