PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70401-70450 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.3678 | 98.7956 | 95.9807 | 75.1838 | 9023 | 110 | 9170 | 384 | 8 | 2.0833 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.3678 | 98.7956 | 95.9807 | 75.1838 | 9023 | 110 | 9170 | 384 | 8 | 2.0833 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.4149 | 87.7369 | 99.8786 | 37.6230 | 787 | 110 | 823 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | het | 97.8071 | 96.6657 | 98.9758 | 87.5900 | 3189 | 110 | 3189 | 33 | 16 | 48.4848 | |
| jmaeng-gatk | SNP | tv | HG002compoundhet | * | 99.2678 | 98.7672 | 99.7735 | 49.6292 | 8813 | 110 | 8810 | 20 | 17 | 85.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.7857 | 0.0000 | 0.0000 | 2 | 110 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 53.6324 | 61.8056 | 47.3684 | 65.3285 | 178 | 110 | 180 | 200 | 197 | 98.5000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 79.8588 | 70.1897 | 92.6174 | 71.9397 | 259 | 110 | 276 | 22 | 21 | 95.4545 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 43.9926 | 38.2022 | 51.8519 | 68.8462 | 68 | 110 | 84 | 78 | 56 | 71.7949 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.7857 | 0.0000 | 0.0000 | 2 | 110 | 0 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.7525 | 97.3468 | 76.6261 | 86.4563 | 4036 | 110 | 4088 | 1247 | 102 | 8.1796 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 88.8389 | 81.4189 | 97.7470 | 86.4139 | 482 | 110 | 564 | 13 | 1 | 7.6923 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.7820 | 95.3547 | 26.7520 | 84.5618 | 2258 | 110 | 2340 | 6407 | 146 | 2.2788 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 65.3789 | 96.5057 | 49.4344 | 75.2664 | 3038 | 110 | 3190 | 3263 | 93 | 2.8501 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 20.8696 | 12.0000 | 80.0000 | 51.2195 | 15 | 110 | 16 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 94.6758 | 93.5408 | 95.8387 | 47.4428 | 1593 | 110 | 5988 | 260 | 204 | 78.4615 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5418 | 99.2552 | 99.8299 | 54.5384 | 14660 | 110 | 14675 | 25 | 12 | 48.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 49.1036 | 34.5238 | 85.0000 | 53.9171 | 58 | 110 | 85 | 15 | 15 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1862 | 98.9111 | 99.4628 | 53.1375 | 9992 | 110 | 9998 | 54 | 37 | 68.5185 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | homalt | 68.2081 | 51.7544 | 100.0000 | 92.8701 | 118 | 110 | 118 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | het | 98.1718 | 99.6126 | 96.7721 | 75.4925 | 28282 | 110 | 27402 | 914 | 28 | 3.0635 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | het | 95.2908 | 98.8427 | 91.9853 | 54.7039 | 9395 | 110 | 4017 | 350 | 50 | 14.2857 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 52.5424 | 36.0465 | 96.8750 | 65.2174 | 62 | 110 | 62 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.0412 | 96.4378 | 99.6987 | 66.1107 | 2978 | 110 | 2978 | 9 | 7 | 77.7778 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | hetalt | 92.5754 | 89.1412 | 96.2848 | 45.0369 | 903 | 110 | 933 | 36 | 35 | 97.2222 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 80.0047 | 81.9376 | 78.1609 | 70.0413 | 499 | 110 | 340 | 95 | 57 | 60.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e0 | homalt | 70.4000 | 54.5455 | 99.2481 | 84.0144 | 132 | 110 | 132 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0981 | 99.2004 | 98.9959 | 68.2271 | 13647 | 110 | 13606 | 138 | 117 | 84.7826 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0981 | 99.2004 | 98.9959 | 68.2271 | 13647 | 110 | 13606 | 138 | 117 | 84.7826 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5935 | 99.4554 | 99.7320 | 55.2895 | 20089 | 110 | 20097 | 54 | 39 | 72.2222 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5288 | 99.4462 | 99.6115 | 59.5139 | 19752 | 110 | 19745 | 77 | 49 | 63.6364 | |
| astatham-gatk | INDEL | * | map_l125_m2_e1 | * | 96.4891 | 95.0562 | 97.9658 | 89.1866 | 2115 | 110 | 2119 | 44 | 9 | 20.4545 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1232 | 93.1973 | 99.2389 | 33.3853 | 1507 | 110 | 1695 | 13 | 13 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 62.9373 | 64.4013 | 61.5385 | 92.2212 | 199 | 110 | 200 | 125 | 107 | 85.6000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 33.9034 | 47.8673 | 26.2467 | 55.9028 | 101 | 110 | 100 | 281 | 269 | 95.7295 | |
| ckim-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 95.5256 | 95.3012 | 95.7511 | 35.3496 | 2231 | 110 | 2231 | 99 | 96 | 96.9697 | |
| ckim-dragen | SNP | ti | map_l250_m2_e1 | * | 97.3249 | 97.8132 | 96.8415 | 89.7690 | 4965 | 111 | 4967 | 162 | 20 | 12.3457 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7195 | 94.2517 | 99.3201 | 38.1124 | 1820 | 111 | 2045 | 14 | 14 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7195 | 94.2517 | 99.3201 | 38.1124 | 1820 | 111 | 2045 | 14 | 14 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 63.3474 | 64.9842 | 61.7910 | 92.1527 | 206 | 111 | 207 | 128 | 110 | 85.9375 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | het | 98.1728 | 99.6214 | 96.7658 | 76.7357 | 29207 | 111 | 28304 | 946 | 28 | 2.9598 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.8929 | 0.0000 | 0.0000 | 1 | 111 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 0.8929 | 0.0000 | 0.0000 | 1 | 111 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | func_cds | het | 99.2091 | 99.0055 | 99.4135 | 34.5015 | 11050 | 111 | 11018 | 65 | 23 | 35.3846 | |
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | het | 58.7361 | 41.5789 | 100.0000 | 99.0493 | 79 | 111 | 79 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.0758 | 97.7052 | 94.4998 | 74.6425 | 4726 | 111 | 4742 | 276 | 80 | 28.9855 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9711 | 98.6779 | 99.2660 | 59.5335 | 8285 | 111 | 8250 | 61 | 52 | 85.2459 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.5369 | 96.2764 | 98.8308 | 48.6037 | 2870 | 111 | 2874 | 34 | 25 | 73.5294 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.1044 | 93.8977 | 98.4174 | 74.4802 | 1708 | 111 | 1679 | 27 | 14 | 51.8519 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.1044 | 93.8977 | 98.4174 | 74.4802 | 1708 | 111 | 1679 | 27 | 14 | 51.8519 | |