PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69251-69300 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | * | map_l150_m2_e0 | homalt | 99.4944 | 99.2307 | 99.7595 | 68.4345 | 11609 | 90 | 11614 | 28 | 25 | 89.2857 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.2941 | 99.0714 | 99.5178 | 62.5456 | 9602 | 90 | 9699 | 47 | 29 | 61.7021 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 58.1410 | 81.6327 | 45.1485 | 57.8816 | 400 | 90 | 228 | 277 | 270 | 97.4729 | |
| ckim-dragen | SNP | ti | map_l250_m2_e1 | het | 96.3677 | 97.2719 | 95.4802 | 91.4419 | 3209 | 90 | 3211 | 152 | 11 | 7.2368 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.3063 | 96.6102 | 98.0125 | 68.8327 | 2565 | 90 | 2515 | 51 | 39 | 76.4706 | |
| ckim-gatk | INDEL | * | map_siren | * | 98.0865 | 98.7854 | 97.3974 | 85.2125 | 7320 | 90 | 7335 | 196 | 24 | 12.2449 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | homalt | 98.1474 | 96.6493 | 99.6928 | 88.8202 | 2596 | 90 | 2596 | 8 | 4 | 50.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 71.1668 | 93.6709 | 57.3812 | 87.0357 | 1332 | 90 | 1376 | 1022 | 85 | 8.3170 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | * | 98.1895 | 97.4902 | 98.8989 | 82.4896 | 3496 | 90 | 3503 | 39 | 9 | 23.0769 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 90 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | * | 77.1252 | 65.1163 | 94.5652 | 81.3576 | 168 | 90 | 174 | 10 | 9 | 90.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1212 | 96.7368 | 99.5458 | 35.0221 | 2668 | 90 | 2630 | 12 | 9 | 75.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.8451 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 90 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | het | 44.0534 | 31.2977 | 74.3590 | 93.8389 | 41 | 90 | 29 | 10 | 1 | 10.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 76.8743 | 65.1163 | 93.8144 | 55.2995 | 168 | 90 | 182 | 12 | 10 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | * | 90.7740 | 93.4211 | 88.2728 | 86.1304 | 1278 | 90 | 1799 | 239 | 111 | 46.4435 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 34.8996 | 38.9262 | 31.6279 | 50.4608 | 58 | 91 | 136 | 294 | 156 | 53.0612 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.2273 | 96.9246 | 89.8017 | 74.7396 | 2868 | 91 | 2853 | 324 | 8 | 2.4691 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 54.2716 | 87.3611 | 39.3624 | 86.5975 | 629 | 91 | 605 | 932 | 37 | 3.9700 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.7334 | 83.3333 | 97.1983 | 70.7071 | 455 | 91 | 451 | 13 | 8 | 61.5385 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 1.0870 | 100.0000 | 1 | 91 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 34.2641 | 93.9894 | 20.9509 | 81.3237 | 1423 | 91 | 1507 | 5686 | 93 | 1.6356 | |
| gduggal-bwavard | INDEL | * | map_l100_m2_e0 | homalt | 95.9415 | 92.7835 | 99.3220 | 77.0294 | 1170 | 91 | 1172 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 49.6103 | 86.3158 | 34.8083 | 73.4368 | 574 | 91 | 590 | 1105 | 1001 | 90.5882 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.7886 | 91.4554 | 84.4045 | 45.0390 | 974 | 91 | 3572 | 660 | 647 | 98.0303 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.9123 | 83.3333 | 97.6190 | 70.4225 | 455 | 91 | 451 | 11 | 8 | 72.7273 | |
| jli-custom | INDEL | D1_5 | HG002complexvar | het | 99.7322 | 99.5618 | 99.9033 | 54.7904 | 20674 | 91 | 20667 | 20 | 6 | 30.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m1_e0 | het | 96.1010 | 93.1835 | 99.2070 | 77.7758 | 1244 | 91 | 1251 | 10 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002complexvar | homalt | 99.5497 | 99.1413 | 99.9615 | 53.6591 | 10507 | 91 | 10381 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 1.0870 | 100.0000 | 1 | 91 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | map_l125_m1_e0 | homalt | 98.9113 | 98.4471 | 99.3798 | 71.3800 | 5769 | 91 | 5769 | 36 | 25 | 69.4444 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4707 | 92.3849 | 98.7698 | 48.9915 | 1104 | 91 | 1124 | 14 | 13 | 92.8571 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5615 | 99.2123 | 99.9132 | 66.4238 | 11461 | 91 | 11511 | 10 | 8 | 80.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5615 | 99.2123 | 99.9132 | 66.4238 | 11461 | 91 | 11511 | 10 | 8 | 80.0000 | |
| ltrigg-rtg1 | SNP | tv | HG002compoundhet | het | 98.8241 | 98.0526 | 99.6078 | 50.3515 | 4582 | 91 | 4572 | 18 | 4 | 22.2222 | |
| rpoplin-dv42 | SNP | ti | HG002complexvar | homalt | 99.9574 | 99.9530 | 99.9617 | 18.4113 | 193372 | 91 | 193367 | 74 | 72 | 97.2973 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7610 | 98.5407 | 96.9935 | 76.3552 | 6145 | 91 | 6291 | 195 | 48 | 24.6154 | |
| ltrigg-rtg2 | SNP | tv | HG002compoundhet | * | 99.3414 | 98.9802 | 99.7052 | 44.7928 | 8832 | 91 | 8795 | 26 | 6 | 23.0769 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | * | 97.4261 | 95.7377 | 99.1752 | 91.7964 | 2044 | 91 | 2044 | 17 | 8 | 47.0588 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | homalt | 64.8485 | 54.0404 | 81.0606 | 80.8696 | 107 | 91 | 107 | 25 | 23 | 92.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.8053 | 79.1762 | 86.7830 | 47.8544 | 346 | 91 | 348 | 53 | 41 | 77.3585 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002complexvar | het | 95.2931 | 91.7796 | 99.0863 | 53.6689 | 1016 | 91 | 976 | 9 | 4 | 44.4444 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.2310 | 86.9440 | 98.2026 | 35.7143 | 606 | 91 | 601 | 11 | 11 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4385 | 98.6779 | 96.2299 | 81.4052 | 6792 | 91 | 6815 | 267 | 17 | 6.3670 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.0766 | 96.6507 | 99.5451 | 88.1460 | 2626 | 91 | 2626 | 12 | 11 | 91.6667 | |
| astatham-gatk | SNP | ti | map_l100_m0_e0 | homalt | 99.3534 | 98.8294 | 99.8830 | 59.4667 | 7683 | 91 | 7683 | 9 | 8 | 88.8889 | |
| astatham-gatk | SNP | tv | HG002complexvar | homalt | 99.9458 | 99.9043 | 99.9874 | 22.8056 | 95020 | 91 | 95005 | 12 | 10 | 83.3333 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.7132 | 76.4249 | 60.7843 | 87.7538 | 295 | 91 | 341 | 220 | 80 | 36.3636 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.2061 | 97.3623 | 97.0504 | 40.0412 | 3359 | 91 | 3389 | 103 | 49 | 47.5728 | |