PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1380 1381 1382 1383 1384 1385 1386 1387 1388 ... 1720 1721 » 69151-69200 / 86044 show all
anovak-vg	INDEL	D1_5	map_l125_m2_e1	het	82.1373	88.5714	76.5746	87.9814	682	88	693	212	70	33.0189
astatham-gatk	INDEL	I1_5	*	homalt	99.7125	99.8544	99.5710	55.1217	60340	88	60345	260	257	98.8462
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	97.2141	96.6855	97.7484	68.9339	2567	88	2518	58	46	79.3103
astatham-gatk	SNP	ti	map_l150_m2_e0	homalt	99.3599	98.8445	99.8806	70.6148	7528	88	7528	9	8	88.8889
astatham-gatk	SNP	ti	map_l150_m2_e1	homalt	99.3663	98.8561	99.8818	70.6476	7605	88	7605	9	8	88.8889
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.2670	98.6631	99.8783	77.1278	6568	89	6568	8	5	62.5000
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2913	98.6803	99.9099	43.4022	6655	89	6655	6	1	16.6667
anovak-vg	INDEL	D1_5	map_l125_m0_e0	*	80.9550	82.0565	79.8828	90.2159	407	89	409	103	43	41.7476
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	10.1868	6.3158	26.3158	62.7451	6	89	5	14	2	14.2857
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	68.7372	91.6432	54.9921	52.9543	976	89	1388	1136	1069	94.1021
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	37.4335	27.0492	60.7595	65.3509	33	89	48	31	14	45.1613
anovak-vg	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	89.1362	91.0282	87.3213	73.7422	903	89	916	133	46	34.5865
asubramanian-gatk	INDEL	I1_5	map_l150_m2_e1	*	89.6631	83.2392	97.1616	92.9647	442	89	445	13	1	7.6923
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.6266	99.2892	97.9729	65.4849	12432	89	12276	254	243	95.6693
gduggal-bwafb	INDEL	*	map_l125_m1_e0	*	96.9083	95.7760	98.0676	85.9889	2018	89	2030	40	8	20.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	53.3937	39.8649	80.8219	88.1107	59	89	59	14	7	50.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	88.8331	79.9097	100.0000	43.6306	354	89	354	0	0
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	79.8194	68.1004	96.4103	67.2819	190	89	188	7	7	100.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	57.1429	40.2685	98.3607	88.5338	60	89	60	1	0	0.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	58.2160	41.0596	100.0000	66.4865	62	89	62	0	0
gduggal-bwavard	INDEL	*	map_l100_m1_e0	homalt	95.9129	92.7465	99.3031	75.5380	1138	89	1140	8	5	62.5000
gduggal-bwavard	INDEL	D16_PLUS	HG002complexvar	homalt	80.7881	69.2042	97.0297	57.4737	200	89	196	6	5	83.3333
jpowers-varprowl	SNP	*	map_l250_m2_e1	homalt	98.1703	96.7255	99.6588	90.0637	2629	89	2629	9	5	55.5556
jli-custom	INDEL	D16_PLUS	*	hetalt	97.3443	95.3958	99.3741	36.1316	1844	89	2064	13	13	100.0000
jli-custom	INDEL	I1_5	*	homalt	99.8065	99.8527	99.7603	53.8126	60339	89	60343	145	140	96.5517
jpowers-varprowl	INDEL	*	map_l125_m1_e0	het	92.8465	93.3333	92.3647	89.2132	1246	89	1246	103	73	70.8738
ltrigg-rtg1	INDEL	D6_15	HG002complexvar	hetalt	93.3550	91.2142	95.5988	55.5303	924	89	934	43	43	100.0000
ckim-isaac	INDEL	I1_5	HG002compoundhet	homalt	68.0851	72.9483	63.8298	82.4627	240	89	240	136	132	97.0588
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	79.4418	90.8058	70.6058	71.2226	879	89	944	393	338	86.0051
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	83.8820	73.9003	96.9811	55.3872	252	89	257	8	7	87.5000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.1609	98.4997	99.8312	49.4969	5843	89	5913	10	6	60.0000
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	83.8820	73.9003	96.9811	55.3120	252	89	257	8	7	87.5000
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.4513	96.2447	92.7236	43.0556	2281	89	2281	179	171	95.5307
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.8442	97.6336	96.0674	58.0189	3672	89	5814	238	216	90.7563
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.8442	97.6336	96.0674	58.0189	3672	89	5814	238	216	90.7563
qzeng-custom	SNP	ti	HG002compoundhet	homalt	98.8966	98.7963	98.9971	38.0829	7305	89	5429	55	41	74.5455
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.3128	96.6816	100.0000	40.4561	2593	89	2611	0	0
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	94.9746	0.0000	0.0000	1682	89	0	0	0
ckim-dragen	INDEL	D6_15	HG002complexvar	hetalt	93.7506	91.2142	96.4321	47.8822	924	89	973	36	36	100.0000
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	89.3587	81.9106	98.2968	40.7781	403	89	404	7	6	85.7143
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	28.5000	17.5926	75.0000	88.5167	19	89	18	6	1	16.6667
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	82.6345	81.9473	83.3333	60.9010	404	89	405	81	78	96.2963
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	48.4627	89.8402	33.1807	64.3673	787	89	797	1605	1594	99.3146
gduggal-snapplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	89	0	0	0
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	96.1174	96.1050	96.1298	45.0129	2196	89	2459	99	35	35.3535
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	89	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	69.3384	66.5414	72.3810	85.5372	177	89	152	58	39	67.2414
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	89.8366	96.6865	83.8931	79.2152	2597	89	2573	494	7	1.4170
gduggal-snapvard	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.2185	96.7495	99.7328	29.9465	2649	89	2613	7	4	57.1429
gduggal-snapvard	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.8156	98.5801	99.0522	46.3316	6179	89	6166	59	7	11.8644

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge