PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69051-69100 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | tv | map_l125_m2_e1 | * | 99.5225 | 99.4777 | 99.5673 | 71.4702 | 16570 | 87 | 16568 | 72 | 10 | 13.8889 | |
| hfeng-pmm3 | SNP | ti | map_l125_m0_e0 | * | 99.3611 | 99.3183 | 99.4039 | 74.1190 | 12675 | 87 | 12673 | 76 | 11 | 14.4737 | |
| jlack-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.1882 | 98.5677 | 99.8166 | 67.8547 | 5987 | 87 | 5987 | 11 | 7 | 63.6364 | |
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | * | 98.5497 | 98.7953 | 98.3053 | 89.3707 | 7135 | 87 | 7135 | 123 | 15 | 12.1951 | |
| hfeng-pmm2 | SNP | tv | map_l100_m1_e0 | het | 99.2617 | 99.4357 | 99.0884 | 69.5075 | 15330 | 87 | 15326 | 141 | 12 | 8.5106 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e0 | het | 99.2723 | 99.4486 | 99.0966 | 70.7844 | 15690 | 87 | 15686 | 143 | 12 | 8.3916 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e1 | het | 99.2765 | 99.4541 | 99.0995 | 70.8119 | 15851 | 87 | 15847 | 144 | 12 | 8.3333 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | het | 97.2703 | 95.5155 | 99.0909 | 86.8763 | 1853 | 87 | 1853 | 17 | 8 | 47.0588 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | het | 97.3057 | 95.5725 | 99.1029 | 86.9625 | 1878 | 87 | 1878 | 17 | 8 | 47.0588 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 67.2776 | 57.7670 | 80.5369 | 88.2492 | 119 | 87 | 120 | 29 | 23 | 79.3103 | |
| mlin-fermikit | INDEL | I6_15 | HG002complexvar | homalt | 91.3948 | 92.8336 | 90.0000 | 56.7129 | 1127 | 87 | 1152 | 128 | 127 | 99.2188 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1272 | 97.5987 | 98.6615 | 84.6994 | 3536 | 87 | 3538 | 48 | 30 | 62.5000 | |
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 87 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 87 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | het | 43.8202 | 30.9524 | 75.0000 | 93.9394 | 39 | 87 | 27 | 9 | 1 | 11.1111 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | hetalt | 21.6216 | 12.1212 | 100.0000 | 96.0265 | 12 | 87 | 12 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 87 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | homalt | 98.0400 | 96.4677 | 99.6644 | 87.9687 | 2376 | 87 | 2376 | 8 | 4 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7102 | 99.4704 | 99.9511 | 57.5377 | 16342 | 87 | 16340 | 8 | 1 | 12.5000 | |
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 87 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 87 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 87 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.9438 | 31.4961 | 78.4314 | 66.6667 | 40 | 87 | 40 | 11 | 11 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m1_e0 | * | 68.3429 | 66.2791 | 70.5394 | 88.5238 | 171 | 87 | 170 | 71 | 65 | 91.5493 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 34.0909 | 0.0000 | 0.0000 | 45 | 87 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 16.9811 | 59.8485 | 0 | 87 | 9 | 44 | 12 | 27.2727 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | * | 90.7660 | 93.5026 | 88.1850 | 85.4828 | 1252 | 87 | 1754 | 235 | 108 | 45.9574 | |
| anovak-vg | INDEL | D1_5 | map_l100_m1_e0 | homalt | 89.7866 | 85.3041 | 94.7664 | 81.8274 | 505 | 87 | 507 | 28 | 27 | 96.4286 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.8935 | 85.7610 | 94.4444 | 82.5788 | 524 | 87 | 527 | 31 | 29 | 93.5484 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 76.4706 | 0 | 87 | 0 | 4 | 2 | 50.0000 | ||
| rpoplin-dv42 | SNP | * | HG002compoundhet | het | 99.5408 | 99.3864 | 99.6957 | 45.1283 | 14091 | 87 | 14087 | 43 | 32 | 74.4186 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | * | 98.4440 | 98.1000 | 98.7904 | 87.6879 | 4492 | 87 | 4492 | 55 | 36 | 65.4545 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | * | 96.5485 | 94.7048 | 98.4655 | 65.1748 | 1556 | 87 | 1540 | 24 | 18 | 75.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 73.9245 | 59.9078 | 96.5035 | 42.1053 | 130 | 87 | 138 | 5 | 5 | 100.0000 | |
| ckim-vqsr | SNP | tv | segdup | homalt | 98.5612 | 97.3132 | 99.8416 | 90.0895 | 3151 | 87 | 3151 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e0 | * | 96.4662 | 96.0383 | 96.8979 | 94.3332 | 2109 | 87 | 2905 | 93 | 66 | 70.9677 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0199 | 98.6449 | 99.3978 | 76.9388 | 6333 | 87 | 6272 | 38 | 24 | 63.1579 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0199 | 98.6449 | 99.3978 | 76.9388 | 6333 | 87 | 6272 | 38 | 24 | 63.1579 | |
| dgrover-gatk | SNP | * | map_l250_m2_e1 | het | 98.1329 | 98.3473 | 97.9194 | 91.5436 | 5177 | 87 | 5177 | 110 | 25 | 22.7273 | |
| dgrover-gatk | SNP | ti | map_l100_m2_e0 | homalt | 99.7264 | 99.5248 | 99.9287 | 59.9046 | 18222 | 87 | 18222 | 13 | 11 | 84.6154 | |
| dgrover-gatk | SNP | ti | map_l100_m2_e1 | homalt | 99.7264 | 99.5242 | 99.9294 | 59.8793 | 18406 | 88 | 18406 | 13 | 11 | 84.6154 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.9417 | 80.9524 | 98.6807 | 38.3740 | 374 | 88 | 374 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m1_e0 | * | 64.8438 | 48.5380 | 97.6471 | 96.7779 | 83 | 88 | 83 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.7351 | 86.0317 | 93.7716 | 60.6535 | 542 | 88 | 542 | 36 | 19 | 52.7778 | |
| egarrison-hhga | INDEL | I16_PLUS | * | homalt | 93.8558 | 94.3626 | 93.3544 | 58.5193 | 1473 | 88 | 1475 | 105 | 76 | 72.3810 | |
| ckim-vqsr | INDEL | D6_15 | HG002complexvar | hetalt | 93.7593 | 91.3129 | 96.3403 | 47.3985 | 925 | 88 | 974 | 37 | 37 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.4476 | 97.8775 | 99.0244 | 81.2649 | 4058 | 88 | 4060 | 40 | 19 | 47.5000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | * | 96.4393 | 96.0449 | 96.8369 | 94.4522 | 2137 | 88 | 2939 | 96 | 68 | 70.8333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7182 | 95.3340 | 98.1431 | 70.1548 | 1798 | 88 | 1797 | 34 | 22 | 64.7059 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.6355 | 82.0408 | 50.6542 | 55.8581 | 402 | 88 | 542 | 528 | 513 | 97.1591 | |