PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6851-6900 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 92.5000 | 96.8203 | 0 | 0 | 37 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 90.9091 | 96.6206 | 0 | 0 | 20 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 85.7143 | 97.2973 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8391 | 0 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 100.0000 | 99.4698 | 0 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 100.0000 | 99.6011 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.6855 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 99.0888 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C1_5 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | * | * | 98.7212 | 100.0000 | 97.4747 | 93.7931 | 7 | 0 | 386 | 10 | 3 | 30.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | * | het | 98.3240 | 100.0000 | 96.7033 | 93.1061 | 7 | 0 | 176 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 98.1132 | 93.2138 | 0 | 0 | 156 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 98.1818 | 96.0630 | 0 | 0 | 54 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | * | 99.2126 | 100.0000 | 98.4375 | 83.7150 | 4 | 0 | 378 | 6 | 2 | 33.3333 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | het | 99.1354 | 100.0000 | 98.2857 | 78.8392 | 4 | 0 | 172 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 98.7179 | 82.7624 | 0 | 0 | 154 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 98.1132 | 91.5335 | 0 | 0 | 52 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 97.9310 | 86.3078 | 0 | 0 | 142 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 95.0000 | 88.3041 | 0 | 0 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 99.1935 | 85.6978 | 0 | 0 | 123 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 97.3941 | 0 | 0 | 14 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 98.0198 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 97.4684 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.8333 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||