PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68901-68950 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6996 | 97.7430 | 99.6751 | 54.6036 | 3681 | 85 | 3681 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6996 | 97.7430 | 99.6751 | 54.6036 | 3681 | 85 | 3681 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3984 | 98.6070 | 98.1907 | 77.5143 | 6017 | 85 | 6024 | 111 | 100 | 90.0901 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 86.7395 | 76.5840 | 100.0000 | 47.5746 | 278 | 85 | 281 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8633 | 99.8472 | 99.8795 | 59.6020 | 55546 | 85 | 55530 | 67 | 38 | 56.7164 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e1 | homalt | 99.6670 | 99.5404 | 99.7940 | 62.9692 | 18409 | 85 | 18410 | 38 | 36 | 94.7368 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3982 | 97.2756 | 99.5471 | 54.5040 | 3035 | 85 | 3077 | 14 | 13 | 92.8571 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | homalt | 99.8127 | 99.6852 | 99.9406 | 57.7080 | 26918 | 85 | 26916 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.9611 | 96.9686 | 82.1752 | 61.2865 | 2719 | 85 | 2720 | 590 | 583 | 98.8136 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 80.8856 | 69.5341 | 96.6667 | 66.1290 | 194 | 85 | 203 | 7 | 7 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0073 | 98.6439 | 99.3734 | 43.8166 | 6183 | 85 | 6185 | 39 | 38 | 97.4359 | |
| ndellapenna-hhga | INDEL | * | map_siren | het | 97.8580 | 98.1145 | 97.6028 | 80.6313 | 4423 | 85 | 4438 | 109 | 50 | 45.8716 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0226 | 86.5506 | 98.2332 | 38.6117 | 547 | 85 | 556 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.7649 | 97.1817 | 98.3552 | 68.9461 | 2931 | 85 | 2930 | 49 | 11 | 22.4490 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.3503 | 99.2642 | 99.4366 | 68.8610 | 11467 | 85 | 11472 | 65 | 58 | 89.2308 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.3503 | 99.2642 | 99.4366 | 68.8610 | 11467 | 85 | 11472 | 65 | 58 | 89.2308 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3437 | 96.0575 | 98.6648 | 74.3831 | 2071 | 85 | 2069 | 28 | 19 | 67.8571 | |
| asubramanian-gatk | INDEL | D6_15 | HG002complexvar | het | 98.2617 | 97.2756 | 99.2679 | 59.9547 | 3035 | 85 | 2983 | 22 | 18 | 81.8182 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 89.6780 | 83.2016 | 97.2477 | 92.2073 | 421 | 85 | 424 | 12 | 1 | 8.3333 | |
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | het | 81.8860 | 88.2920 | 76.3466 | 87.4430 | 641 | 85 | 652 | 202 | 65 | 32.1782 | |
| bgallagher-sentieon | INDEL | I1_5 | * | homalt | 99.6433 | 99.8593 | 99.4283 | 55.0054 | 60343 | 85 | 60348 | 347 | 343 | 98.8473 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7905 | 86.5506 | 100.0000 | 38.2131 | 547 | 85 | 574 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.0809 | 94.7303 | 99.5510 | 41.4525 | 1528 | 85 | 5987 | 27 | 23 | 85.1852 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7342 | 99.4993 | 99.9702 | 64.1818 | 16890 | 85 | 16793 | 5 | 3 | 60.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7342 | 99.4993 | 99.9702 | 64.1818 | 16890 | 85 | 16793 | 5 | 3 | 60.0000 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | het | 94.5928 | 95.6743 | 93.5356 | 91.6445 | 1880 | 85 | 1881 | 130 | 24 | 18.4615 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.1870 | 98.9876 | 99.3871 | 63.6368 | 8311 | 85 | 8270 | 51 | 43 | 84.3137 | |
| ckim-dragen | SNP | ti | map_l250_m1_e0 | het | 96.2459 | 97.1361 | 95.3719 | 90.8281 | 2883 | 85 | 2885 | 140 | 10 | 7.1429 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 83.5566 | 85.6419 | 81.5705 | 83.0803 | 507 | 85 | 509 | 115 | 98 | 85.2174 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | homalt | 64.7541 | 48.1707 | 98.7500 | 85.5596 | 79 | 85 | 79 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6346 | 99.4826 | 99.7870 | 59.5165 | 16344 | 85 | 17330 | 37 | 22 | 59.4595 | |
| ckim-dragen | INDEL | * | map_siren | het | 97.4637 | 98.1145 | 96.8216 | 84.6377 | 4423 | 85 | 4417 | 145 | 14 | 9.6552 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | het | 98.4531 | 97.4235 | 99.5046 | 89.2351 | 3214 | 85 | 3214 | 16 | 6 | 37.5000 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | hetalt | 47.0062 | 31.4516 | 93.0000 | 92.1198 | 39 | 85 | 93 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | hetalt | 47.6427 | 32.0000 | 93.2039 | 92.5254 | 40 | 85 | 96 | 7 | 5 | 71.4286 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 60.8295 | 43.7086 | 100.0000 | 34.7826 | 66 | 85 | 75 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.9804 | 94.2019 | 99.9277 | 38.3793 | 1381 | 85 | 1383 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.9529 | 91.4315 | 96.6173 | 65.9835 | 907 | 85 | 914 | 32 | 1 | 3.1250 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.9278 | 95.3271 | 94.5317 | 83.5556 | 1734 | 85 | 1504 | 87 | 55 | 63.2184 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.9278 | 95.3271 | 94.5317 | 83.5556 | 1734 | 85 | 1504 | 87 | 55 | 63.2184 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9006 | 91.1550 | 92.6585 | 71.5146 | 876 | 85 | 833 | 66 | 61 | 92.4242 | |
| hfeng-pmm3 | SNP | * | map_l250_m2_e1 | * | 99.0226 | 98.9358 | 99.1095 | 88.7342 | 7902 | 85 | 7902 | 71 | 9 | 12.6761 | |
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | * | 99.3900 | 99.2241 | 99.5564 | 68.9143 | 10998 | 86 | 10997 | 49 | 15 | 30.6122 | |
| hfeng-pmm3 | INDEL | * | map_siren | * | 99.0674 | 98.8394 | 99.2964 | 80.1151 | 7324 | 86 | 7339 | 52 | 13 | 25.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 90.9909 | 83.7736 | 99.5690 | 47.3923 | 444 | 86 | 462 | 2 | 1 | 50.0000 | |
| jlack-gatk | SNP | tv | map_l125_m2_e0 | homalt | 99.1889 | 98.5707 | 99.8149 | 67.8533 | 5931 | 86 | 5931 | 11 | 7 | 63.6364 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.9073 | 92.8033 | 99.2261 | 33.2760 | 1109 | 86 | 1154 | 9 | 8 | 88.8889 | |
| jlack-gatk | INDEL | I16_PLUS | * | het | 96.8584 | 96.8359 | 96.8808 | 75.4914 | 2632 | 86 | 2609 | 84 | 21 | 25.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7041 | 99.4765 | 99.9327 | 57.5361 | 16343 | 86 | 16341 | 11 | 4 | 36.3636 | |
| mlin-fermikit | SNP | ti | func_cds | het | 99.4565 | 98.9887 | 99.9288 | 17.2332 | 8418 | 86 | 8418 | 6 | 0 | 0.0000 | |