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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1365 1366 1367 1368 1369 1370 1371 1372 1373 ... 1720 1721 » 68401-68450 / 86044 show all
dgrover-gatk	INDEL	*	map_siren	*	98.9418	98.9474	98.9362	83.4662	7332	78	7347	79	18	22.7848
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0909	98.7850	99.3987	76.0252	6342	78	6282	38	24	63.1579
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0909	98.7850	99.3987	76.0252	6342	78	6282	38	24	63.1579
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	98.2951	97.8471	98.7472	84.7253	3545	78	3547	45	27	60.0000
ckim-isaac	SNP	ti	func_cds	het	99.5275	99.0828	99.9763	20.1440	8426	78	8426	2	0	0.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.8226	97.8845	99.7788	48.7459	3609	78	3609	8	6	75.0000
jlack-gatk	INDEL	*	map_l100_m2_e1	*	95.3410	97.9233	92.8914	88.4293	3678	78	3685	282	30	10.6383
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	95.9315	98.6064	93.3978	71.5802	5519	78	5503	389	233	59.8972
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	72.1429	56.4246	100.0000	29.0698	101	78	122	0	0
hfeng-pmm3	SNP	*	HG002complexvar	homalt	99.9822	99.9730	99.9913	19.9554	288496	78	288478	25	24	96.0000
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.7555	99.1808	98.3339	49.8381	9443	78	9443	160	156	97.5000
hfeng-pmm1	INDEL	D16_PLUS	HG002complexvar	*	96.9275	95.2526	98.6624	64.9632	1565	78	1549	21	10	47.6190
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.7813	89.3878	94.3066	53.8721	657	78	646	39	38	97.4359
hfeng-pmm2	SNP	*	map_l250_m1_e0	het	98.0709	98.3596	97.7838	90.2767	4677	78	4677	106	9	8.4906
hfeng-pmm2	SNP	*	map_l250_m2_e0	het	98.1864	98.4983	97.8764	90.6378	5116	78	5116	111	10	9.0090
hfeng-pmm2	SNP	ti	*	homalt	99.9915	99.9903	99.9927	16.7561	802960	78	802952	59	48	81.3559
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0835	99.3208	98.8474	56.8151	11406	78	11406	133	125	93.9850
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.7813	89.3878	94.3066	53.8098	657	78	646	39	38	97.4359
cchapple-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	93.9722	0.0000	0.0000	1216	78	0	0	0
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	93.7240	89.4737	98.3983	44.3222	663	78	1843	30	21	70.0000
cchapple-custom	INDEL	I1_5	HG002complexvar	homalt	99.5426	99.4200	99.6654	46.3203	13370	78	12809	43	42	97.6744
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.6696	96.0426	99.3526	60.4030	1893	78	5525	36	28	77.7778
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.6696	96.0426	99.3526	60.4030	1893	78	5525	36	28	77.7778
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	7.1429	0.0000	0.0000	6	78	0	0	0
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1773	98.9437	99.4120	58.5572	7306	78	7270	43	39	90.6977
ckim-dragen	INDEL	I1_5	HG002complexvar	het	99.6858	99.5712	99.8007	57.6433	18111	78	18030	36	22	61.1111
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	72.1429	56.4246	100.0000	29.4798	101	78	122	0	0
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	88.3912	83.6820	93.6620	67.7273	400	78	399	27	22	81.4815
ghariani-varprowl	INDEL	I1_5	map_l100_m2_e0	*	93.7816	94.2982	93.2706	87.7493	1290	78	1289	93	34	36.5591
ghariani-varprowl	SNP	tv	map_l150_m2_e0	het	96.2824	98.9244	93.7778	83.5770	7174	78	7174	476	75	15.7563
ghariani-varprowl	SNP	tv	map_l150_m2_e0	homalt	98.6939	98.0896	99.3057	75.8431	4005	78	4005	28	15	53.5714
ghariani-varprowl	SNP	tv	map_l150_m2_e1	het	96.2978	98.9385	93.7943	83.6297	7270	78	7270	481	75	15.5925
ghariani-varprowl	SNP	tv	map_l150_m2_e1	homalt	98.7101	98.1132	99.3144	75.8171	4056	78	4056	28	15	53.5714
gduggal-snapplat	INDEL	*	segdup	hetalt	55.6430	40.0000	91.3793	97.9993	52	78	53	5	1	20.0000
gduggal-snapplat	INDEL	D16_PLUS	map_siren	het		0.0000	0.0000	0.0000	0	78	0	0	0
gduggal-snapplat	INDEL	D1_5	map_l125_m1_e0	homalt	86.8336	77.6504	98.4802	88.9449	271	78	324	5	0	0.0000
gduggal-snapplat	INDEL	D1_5	map_l125_m2_e0	homalt	87.4375	78.5714	98.5591	89.4013	286	78	342	5	0	0.0000
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.2061	95.1523	99.3506	63.9597	1531	78	1530	10	3	30.0000
gduggal-snapvard	INDEL	I6_15	segdup	*	60.2107	55.4286	65.8960	90.9708	97	78	114	59	50	84.7458
gduggal-snapvard	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.7991	95.5378	98.0941	72.6859	1670	78	1647	32	12	37.5000
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	37.8203	79.7927	24.7836	90.1732	308	78	315	956	27	2.8243
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	23.2323	22.7723	23.7113	98.6305	23	78	23	74	6	8.1081
gduggal-snapfb	INDEL	D16_PLUS	map_siren	het		0.0000	0.0000	0.0000	0	78	0	0	0
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	64.7059	58.5106	72.3684	53.7994	110	78	110	42	42	100.0000
gduggal-snapfb	INDEL	D1_5	map_l100_m2_e1	*	96.0476	95.9257	96.1698	84.5601	1860	79	1858	74	14	18.9189
ghariani-varprowl	INDEL	*	map_l150_m2_e0	*	91.0274	94.3892	87.8968	95.3487	1329	79	1329	183	52	28.4153
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	80.6350	85.9929	75.9055	63.7764	485	79	482	153	100	65.3595
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	86.9441	95.3611	79.8924	72.5785	1624	79	1633	411	364	88.5645
ghariani-varprowl	SNP	tv	map_l100_m0_e0	homalt	98.6901	97.9459	99.4456	67.1380	3767	79	3767	21	11	52.3810
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	37.3402	48.0263	30.5439	97.0255	73	79	73	166	10	6.0241

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