PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68051-68100 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.2215 | 96.1718 | 96.2714 | 63.1699 | 1859 | 74 | 1859 | 72 | 59 | 81.9444 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.4592 | 94.7518 | 94.1685 | 74.3063 | 1336 | 74 | 1308 | 81 | 70 | 86.4198 | |
| hfeng-pmm1 | SNP | ti | * | homalt | 99.9926 | 99.9908 | 99.9944 | 16.6970 | 802964 | 74 | 802957 | 45 | 35 | 77.7778 | |
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | het | 99.2295 | 98.9754 | 99.4850 | 70.4702 | 7148 | 74 | 7147 | 37 | 11 | 29.7297 | |
| hfeng-pmm1 | INDEL | D16_PLUS | * | het | 97.0973 | 97.6575 | 96.5435 | 74.8637 | 3085 | 74 | 2849 | 102 | 61 | 59.8039 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.8159 | 84.8980 | 77.1084 | 78.5252 | 416 | 74 | 256 | 76 | 74 | 97.3684 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.3459 | 97.0855 | 99.6394 | 45.0946 | 2465 | 74 | 2487 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.2882 | 97.5464 | 95.0621 | 69.7999 | 2942 | 74 | 2984 | 155 | 4 | 2.5807 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | homalt | 99.7511 | 99.5623 | 99.9406 | 63.1402 | 16831 | 74 | 16832 | 10 | 9 | 90.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | homalt | 99.7578 | 99.5741 | 99.9422 | 65.9494 | 17301 | 74 | 17302 | 10 | 9 | 90.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | homalt | 99.7600 | 99.5779 | 99.9428 | 65.9933 | 17458 | 74 | 17465 | 10 | 9 | 90.0000 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6297 | 99.6336 | 99.6257 | 58.2037 | 20125 | 74 | 19963 | 75 | 44 | 58.6667 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | homalt | 69.3694 | 67.5439 | 71.2963 | 80.2016 | 154 | 74 | 154 | 62 | 57 | 91.9355 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | * | 81.7172 | 75.7377 | 88.7218 | 80.5981 | 231 | 74 | 236 | 30 | 28 | 93.3333 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.3739 | 80.8290 | 77.9703 | 91.5921 | 312 | 74 | 315 | 89 | 52 | 58.4270 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1542 | 97.8551 | 98.4553 | 37.1727 | 3376 | 74 | 3378 | 53 | 35 | 66.0377 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | hetalt | 60.7330 | 43.9394 | 98.3051 | 86.6817 | 58 | 74 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7214 | 91.1483 | 98.5861 | 64.1475 | 762 | 74 | 767 | 11 | 6 | 54.5455 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7040 | 99.5496 | 99.8589 | 54.8699 | 16355 | 74 | 16278 | 23 | 8 | 34.7826 | |
| jpowers-varprowl | SNP | tv | map_l150_m1_e0 | homalt | 98.7251 | 98.1247 | 99.3330 | 75.8368 | 3872 | 74 | 3872 | 26 | 16 | 61.5385 | |
| jpowers-varprowl | INDEL | * | segdup | het | 90.0339 | 94.9523 | 85.6000 | 95.0457 | 1392 | 74 | 1391 | 234 | 206 | 88.0342 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7999 | 98.6779 | 98.9222 | 68.1958 | 5523 | 74 | 5507 | 60 | 53 | 88.3333 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.9552 | 93.5145 | 98.5267 | 75.6611 | 1067 | 74 | 1070 | 16 | 10 | 62.5000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e1 | het | 95.3994 | 91.9913 | 99.0698 | 82.6578 | 850 | 74 | 852 | 8 | 0 | 0.0000 | |
| jli-custom | SNP | * | map_l125_m2_e0 | homalt | 99.7463 | 99.5741 | 99.9191 | 65.3928 | 17301 | 74 | 17301 | 14 | 13 | 92.8571 | |
| jli-custom | SNP | * | map_l125_m2_e1 | homalt | 99.7486 | 99.5779 | 99.9199 | 65.4177 | 17458 | 74 | 17458 | 14 | 13 | 92.8571 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | * | 96.9371 | 97.9962 | 95.9006 | 89.1934 | 3619 | 74 | 3626 | 155 | 21 | 13.5484 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0582 | 99.4990 | 96.6586 | 57.2289 | 14696 | 74 | 14695 | 508 | 335 | 65.9449 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | * | 42.7650 | 28.1553 | 88.8889 | 96.7332 | 29 | 74 | 16 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 19.5652 | 10.8434 | 100.0000 | 64.0000 | 9 | 74 | 9 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | het | 94.4093 | 96.1856 | 92.6975 | 87.4548 | 1866 | 74 | 1866 | 147 | 50 | 34.0136 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | het | 94.3848 | 96.2341 | 92.6053 | 87.5145 | 1891 | 74 | 1891 | 151 | 50 | 33.1126 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002complexvar | homalt | 82.5036 | 76.0518 | 90.1515 | 62.3395 | 235 | 74 | 238 | 26 | 26 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.3323 | 99.0070 | 93.7984 | 50.0158 | 7378 | 74 | 7396 | 489 | 75 | 15.3374 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6995 | 99.7594 | 99.6396 | 71.1645 | 30687 | 74 | 30687 | 111 | 109 | 98.1982 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | het | 97.8030 | 96.8417 | 98.7837 | 83.8513 | 2269 | 74 | 2274 | 28 | 4 | 14.2857 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | homalt | 57.7796 | 43.0769 | 87.7193 | 72.0588 | 56 | 74 | 50 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 88.5779 | 97.0912 | 81.4371 | 71.0683 | 2470 | 74 | 2448 | 558 | 8 | 1.4337 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.9377 | 80.6789 | 94.2492 | 85.0311 | 309 | 74 | 295 | 18 | 10 | 55.5556 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 74 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.5483 | 97.3169 | 99.8112 | 34.2765 | 2684 | 74 | 2643 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.1915 | 99.5930 | 94.9031 | 45.9580 | 18109 | 74 | 17428 | 936 | 71 | 7.5855 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | het | 96.1556 | 94.6801 | 97.6778 | 86.3185 | 1317 | 74 | 1346 | 32 | 2 | 6.2500 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | het | 96.1685 | 94.7443 | 97.6361 | 86.4189 | 1334 | 74 | 1363 | 33 | 3 | 9.0909 | |
| gduggal-bwaplat | INDEL | * | segdup | homalt | 95.8873 | 92.2917 | 99.7745 | 93.8089 | 886 | 74 | 885 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002compoundhet | homalt | 64.7761 | 74.5704 | 57.2559 | 81.8487 | 217 | 74 | 217 | 162 | 147 | 90.7407 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.6561 | 26.7327 | 84.8485 | 99.0214 | 27 | 74 | 28 | 5 | 3 | 60.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 32.7273 | 19.5652 | 100.0000 | 62.2222 | 18 | 74 | 17 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 84.3571 | 94.2901 | 76.3174 | 88.4761 | 1222 | 74 | 1231 | 382 | 52 | 13.6126 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5098 | 99.3105 | 99.7100 | 37.0828 | 10658 | 74 | 10658 | 31 | 2 | 6.4516 | |