PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67801-67850 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8210 | 86.6038 | 100.0000 | 44.7917 | 459 | 71 | 477 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5131 | 99.3427 | 99.6841 | 80.0486 | 10730 | 71 | 10730 | 34 | 12 | 35.2941 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | homalt | 82.6907 | 77.0227 | 89.2593 | 61.6477 | 238 | 71 | 241 | 29 | 29 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3427 | 99.6095 | 99.0772 | 37.9144 | 18112 | 71 | 18145 | 169 | 3 | 1.7752 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | homalt | 99.8182 | 99.7420 | 99.8945 | 62.4790 | 27452 | 71 | 27451 | 29 | 26 | 89.6552 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e1 | homalt | 99.8200 | 99.7446 | 99.8955 | 62.4711 | 27725 | 71 | 27724 | 29 | 26 | 89.6552 | |
| jli-custom | SNP | tv | HG002complexvar | homalt | 99.9542 | 99.9254 | 99.9832 | 22.8543 | 95040 | 71 | 95029 | 16 | 11 | 68.7500 | |
| jli-custom | SNP | tv | map_l250_m1_e0 | het | 97.3617 | 96.0269 | 98.7342 | 85.3704 | 1716 | 71 | 1716 | 22 | 7 | 31.8182 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | * | 96.9028 | 98.0201 | 95.8107 | 88.4970 | 3515 | 71 | 3522 | 154 | 21 | 13.6364 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | het | 97.9324 | 96.8819 | 99.0059 | 74.1048 | 2206 | 71 | 2191 | 22 | 1 | 4.5455 | |
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | * | 98.9629 | 98.2990 | 99.6357 | 78.3979 | 4103 | 71 | 4103 | 15 | 6 | 40.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8983 | 99.1544 | 98.6435 | 64.3687 | 8325 | 71 | 8290 | 114 | 105 | 92.1053 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7206 | 65.5340 | 98.5507 | 56.6038 | 135 | 71 | 136 | 2 | 1 | 50.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4808 | 99.3427 | 99.6193 | 80.0419 | 10730 | 71 | 10730 | 41 | 17 | 41.4634 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | het | 77.7518 | 64.8515 | 97.0588 | 93.4772 | 131 | 71 | 132 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e0 | * | 60.1093 | 43.6508 | 96.4912 | 90.7015 | 55 | 71 | 55 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | homalt | 62.1053 | 45.3846 | 98.3333 | 70.5882 | 59 | 71 | 59 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 91.8736 | 85.1464 | 99.7549 | 69.6654 | 407 | 71 | 407 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.2802 | 92.6653 | 95.9524 | 80.0853 | 897 | 71 | 806 | 34 | 28 | 82.3529 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 79.9918 | 88.3797 | 73.0580 | 45.8556 | 540 | 71 | 1928 | 711 | 372 | 52.3207 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 76.0780 | 63.0208 | 95.9596 | 95.2868 | 121 | 71 | 190 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2160 | 81.7010 | 93.5294 | 74.9816 | 317 | 71 | 318 | 22 | 14 | 63.6364 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3339 | 99.0472 | 99.6223 | 38.0132 | 7381 | 71 | 7385 | 28 | 18 | 64.2857 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1067 | 98.2534 | 99.9750 | 43.4659 | 3994 | 71 | 3992 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.8232 | 94.3471 | 91.3476 | 73.3415 | 1185 | 71 | 1193 | 113 | 71 | 62.8319 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 77.5746 | 65.5340 | 95.0355 | 74.5946 | 135 | 71 | 134 | 7 | 5 | 71.4286 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.9430 | 98.1340 | 99.7654 | 46.0565 | 3734 | 71 | 3828 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | hetalt | 96.8057 | 94.1946 | 99.5656 | 57.9927 | 1152 | 71 | 1146 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5935 | 97.6182 | 99.5885 | 50.6933 | 2910 | 71 | 2904 | 12 | 8 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.2394 | 90.3138 | 96.3610 | 69.7623 | 662 | 71 | 662 | 25 | 18 | 72.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3000 | 98.0590 | 92.6920 | 44.9432 | 3587 | 71 | 3729 | 294 | 269 | 91.4966 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.6456 | 97.0042 | 90.5118 | 51.1256 | 2299 | 71 | 2299 | 241 | 85 | 35.2697 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 66.7396 | 61.6216 | 72.7848 | 97.3275 | 114 | 71 | 115 | 43 | 14 | 32.5581 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 63.2216 | 74.9117 | 54.6875 | 63.1124 | 212 | 71 | 210 | 174 | 157 | 90.2299 | |
| ciseli-custom | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7206 | 65.5340 | 98.5507 | 56.6038 | 135 | 71 | 136 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.4368 | 99.3178 | 99.5561 | 50.0867 | 10336 | 71 | 10317 | 46 | 37 | 80.4348 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | het | 95.1276 | 95.2855 | 94.9702 | 94.2264 | 1435 | 71 | 1435 | 76 | 1 | 1.3158 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.5908 | 97.1532 | 68.8529 | 65.1322 | 2423 | 71 | 2425 | 1097 | 4 | 0.3646 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | * | 97.1159 | 97.3177 | 96.9150 | 89.2026 | 2576 | 71 | 2576 | 82 | 11 | 13.4146 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_siren | het | 14.1414 | 8.9744 | 33.3333 | 92.6056 | 7 | 71 | 7 | 14 | 6 | 42.8571 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 25.0000 | 14.4578 | 92.3077 | 18.7500 | 12 | 71 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.4339 | 93.3208 | 80.4936 | 78.1982 | 992 | 71 | 1011 | 245 | 30 | 12.2449 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | * | 96.1820 | 96.1580 | 96.2060 | 83.7201 | 1777 | 71 | 1775 | 70 | 12 | 17.1429 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 58.6032 | 44.0945 | 87.3418 | 56.5934 | 56 | 71 | 69 | 10 | 8 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.6206 | 85.4508 | 69.4444 | 82.3834 | 417 | 71 | 425 | 187 | 171 | 91.4439 | |
| ghariani-varprowl | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.7251 | 97.6459 | 81.2979 | 79.6603 | 2945 | 71 | 2969 | 683 | 7 | 1.0249 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 84.6154 | 0 | 71 | 0 | 2 | 1 | 50.0000 | ||