PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66901-66950 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | HG002compoundhet | hetalt | 96.3319 | 92.9234 | 100.0000 | 22.7493 | 801 | 61 | 798 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 59.7926 | 44.5455 | 90.9091 | 96.3211 | 49 | 61 | 50 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | hetalt | 96.3319 | 92.9234 | 100.0000 | 22.7493 | 801 | 61 | 798 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.4884 | 95.1433 | 66.7958 | 80.7253 | 1195 | 61 | 1207 | 600 | 372 | 62.0000 | |
| gduggal-bwafb | SNP | tv | HG002compoundhet | het | 96.4922 | 98.6946 | 94.3859 | 59.0165 | 4612 | 61 | 4657 | 277 | 52 | 18.7726 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 44.1354 | 31.4607 | 73.9130 | 57.1429 | 28 | 61 | 51 | 18 | 18 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 61 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | segdup | * | 68.6994 | 65.1429 | 72.6667 | 92.8605 | 114 | 61 | 109 | 41 | 40 | 97.5610 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | homalt | 96.6439 | 95.0285 | 98.3151 | 86.5465 | 1166 | 61 | 1167 | 20 | 12 | 60.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | homalt | 97.1880 | 94.7774 | 99.7245 | 70.3593 | 1107 | 61 | 1086 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0231 | 98.3802 | 99.6744 | 47.3579 | 3705 | 61 | 3674 | 12 | 9 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0231 | 98.3802 | 99.6744 | 47.3579 | 3705 | 61 | 3674 | 12 | 9 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4970 | 92.3077 | 98.9145 | 36.5749 | 732 | 61 | 729 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.6243 | 90.3481 | 99.3255 | 49.4027 | 571 | 61 | 589 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | HG002compoundhet | homalt | 33.5403 | 91.1079 | 20.5534 | 62.6200 | 625 | 61 | 624 | 2412 | 2157 | 89.4279 | |
| jpowers-varprowl | INDEL | * | map_l150_m1_e0 | het | 92.1648 | 92.8655 | 91.4747 | 91.4533 | 794 | 61 | 794 | 74 | 48 | 64.8649 | |
| jpowers-varprowl | INDEL | I1_5 | map_siren | homalt | 96.6009 | 94.9670 | 98.2921 | 70.2641 | 1151 | 61 | 1151 | 20 | 15 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4597 | 95.3612 | 97.5838 | 52.4639 | 1254 | 61 | 1252 | 31 | 26 | 83.8710 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.9368 | 91.2482 | 98.9362 | 35.6164 | 636 | 61 | 744 | 8 | 8 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | het | 97.2943 | 96.5865 | 98.0125 | 88.5090 | 1726 | 61 | 1726 | 35 | 1 | 2.8571 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | het | 97.4585 | 96.8557 | 98.0689 | 89.2184 | 1879 | 61 | 1879 | 37 | 1 | 2.7027 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | het | 97.4661 | 96.8957 | 98.0433 | 89.2902 | 1904 | 61 | 1904 | 38 | 1 | 2.6316 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.4289 | 93.6983 | 89.2667 | 80.9128 | 907 | 61 | 840 | 101 | 75 | 74.2574 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | het | 97.7103 | 97.2707 | 98.1540 | 83.4501 | 2174 | 61 | 2180 | 41 | 18 | 43.9024 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8087 | 99.7595 | 99.8579 | 55.0764 | 25298 | 61 | 25300 | 36 | 29 | 80.5556 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002complexvar | homalt | 99.7169 | 99.5464 | 99.8881 | 51.4705 | 13387 | 61 | 13384 | 15 | 14 | 93.3333 | |
| rpoplin-dv42 | SNP | ti | map_l250_m2_e1 | het | 98.3298 | 98.1510 | 98.5093 | 88.6573 | 3238 | 61 | 3238 | 49 | 29 | 59.1837 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | homalt | 99.6799 | 99.4589 | 99.9020 | 69.8014 | 11212 | 61 | 11212 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | homalt | 99.6916 | 99.4786 | 99.9056 | 72.3853 | 11638 | 61 | 11638 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | homalt | 99.6950 | 99.4842 | 99.9066 | 72.4121 | 11766 | 61 | 11766 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | * | 98.3828 | 98.2715 | 98.4943 | 79.4152 | 3468 | 61 | 3467 | 53 | 28 | 52.8302 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.0038 | 78.1362 | 95.6332 | 65.1976 | 218 | 61 | 219 | 10 | 9 | 90.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7613 | 96.7656 | 96.7570 | 71.4697 | 1825 | 61 | 1820 | 61 | 57 | 93.4426 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002compoundhet | het | 55.6184 | 84.9383 | 41.3462 | 47.6949 | 344 | 61 | 258 | 366 | 363 | 99.1803 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3331 | 98.7166 | 99.9574 | 29.1176 | 4692 | 61 | 4689 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 90.8850 | 85.2657 | 97.2973 | 66.0239 | 353 | 61 | 360 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | het | 98.2137 | 97.4098 | 99.0310 | 49.5355 | 2294 | 61 | 2044 | 20 | 9 | 45.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.5049 | 92.7033 | 98.4810 | 62.0192 | 775 | 61 | 778 | 12 | 8 | 66.6667 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.0952 | 98.5606 | 95.6726 | 86.1499 | 4177 | 61 | 4267 | 193 | 28 | 14.5078 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | * | 97.8027 | 97.2222 | 98.3901 | 85.9597 | 2135 | 61 | 2139 | 35 | 6 | 17.1429 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 86.1563 | 76.3566 | 98.8417 | 82.7793 | 197 | 61 | 256 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.1353 | 37.1134 | 100.0000 | 32.0755 | 36 | 61 | 36 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.8660 | 86.0092 | 83.7529 | 81.8446 | 375 | 61 | 366 | 71 | 69 | 97.1831 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.1375 | 97.9385 | 98.3373 | 54.7451 | 2898 | 61 | 2898 | 49 | 23 | 46.9388 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | het | 64.7498 | 67.8947 | 61.8834 | 96.6176 | 129 | 61 | 138 | 85 | 29 | 34.1176 | |
| anovak-vg | INDEL | D1_5 | map_l150_m0_e0 | * | 78.5978 | 78.8927 | 78.3051 | 93.2168 | 228 | 61 | 231 | 64 | 29 | 45.3125 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | het | 81.1800 | 88.1323 | 75.2443 | 90.1933 | 453 | 61 | 462 | 152 | 57 | 37.5000 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | het | 81.1378 | 88.3142 | 75.0400 | 90.1683 | 461 | 61 | 469 | 156 | 58 | 37.1795 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 91.2220 | 89.6785 | 92.8196 | 89.5670 | 530 | 61 | 530 | 41 | 4 | 9.7561 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | * | 97.0837 | 95.3400 | 98.8924 | 68.3287 | 1248 | 61 | 1250 | 14 | 14 | 100.0000 | |