PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66801-66850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | * | 98.6051 | 98.0033 | 99.2142 | 76.9745 | 2945 | 60 | 2904 | 23 | 1 | 4.3478 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 74.4043 | 72.9730 | 75.8929 | 83.4686 | 162 | 60 | 170 | 54 | 48 | 88.8889 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | het | 97.3029 | 97.3992 | 97.2067 | 83.9816 | 2247 | 60 | 2262 | 65 | 26 | 40.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | het | 92.9757 | 90.9774 | 95.0637 | 67.1720 | 605 | 60 | 597 | 31 | 15 | 48.3871 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1042 | 99.4409 | 98.7698 | 49.5614 | 10672 | 60 | 10678 | 133 | 13 | 9.7744 | |
| qzeng-custom | SNP | ti | segdup | homalt | 99.3042 | 99.2005 | 99.4081 | 87.0359 | 7445 | 60 | 7390 | 44 | 39 | 88.6364 | |
| ndellapenna-hhga | SNP | ti | map_l100_m1_e0 | homalt | 99.7965 | 99.6659 | 99.9274 | 59.1233 | 17900 | 60 | 17900 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | homalt | 99.7949 | 99.6723 | 99.9179 | 61.7916 | 18249 | 60 | 18249 | 15 | 15 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e1 | homalt | 99.7970 | 99.6756 | 99.9187 | 61.7788 | 18434 | 60 | 18434 | 15 | 15 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.4386 | 95.2569 | 97.6499 | 83.7824 | 1205 | 60 | 1205 | 29 | 20 | 68.9655 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6805 | 98.0570 | 99.3119 | 64.2623 | 3028 | 60 | 3031 | 21 | 11 | 52.3810 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | homalt | 76.0880 | 63.4146 | 95.0920 | 93.4591 | 104 | 60 | 155 | 8 | 3 | 37.5000 | |
| qzeng-custom | INDEL | * | segdup | * | 96.6734 | 97.6526 | 95.7138 | 94.7770 | 2496 | 60 | 2568 | 115 | 34 | 29.5652 | |
| ltrigg-rtg1 | SNP | tv | HG002compoundhet | homalt | 99.0027 | 98.2290 | 99.7886 | 40.4282 | 3328 | 60 | 3304 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 57.9710 | 62.5000 | 54.0541 | 80.8884 | 100 | 60 | 100 | 85 | 84 | 98.8235 | |
| jmaeng-gatk | SNP | tv | HG002compoundhet | het | 99.2149 | 98.7160 | 99.7189 | 56.1374 | 4613 | 60 | 4611 | 13 | 11 | 84.6154 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.3431 | 83.7398 | 98.0769 | 74.6548 | 309 | 60 | 306 | 6 | 5 | 83.3333 | |
| jli-custom | SNP | * | map_l150_m2_e0 | homalt | 99.7002 | 99.4871 | 99.9142 | 70.0015 | 11639 | 60 | 11639 | 10 | 10 | 100.0000 | |
| jli-custom | SNP | * | map_l150_m2_e1 | homalt | 99.7034 | 99.4927 | 99.9151 | 70.0155 | 11767 | 60 | 11767 | 10 | 10 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | * | 95.9750 | 93.1973 | 98.9234 | 83.1757 | 822 | 60 | 827 | 9 | 2 | 22.2222 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.3987 | 98.9438 | 99.8577 | 44.3311 | 5621 | 60 | 5614 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9335 | 98.4611 | 99.4104 | 64.3027 | 3839 | 60 | 3878 | 23 | 7 | 30.4348 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7706 | 98.9737 | 96.5965 | 71.2228 | 5786 | 60 | 5733 | 202 | 187 | 92.5743 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | homalt | 99.6746 | 99.4871 | 99.8627 | 70.7014 | 11639 | 60 | 11639 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l150_m2_e1 | homalt | 99.6781 | 99.4927 | 99.8642 | 70.7146 | 11767 | 60 | 11767 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l100_m1_e0 | homalt | 99.7937 | 99.6659 | 99.9218 | 56.9365 | 17900 | 60 | 17900 | 14 | 12 | 85.7143 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002complexvar | het | 99.8096 | 99.7111 | 99.9084 | 56.0707 | 20705 | 60 | 20713 | 19 | 12 | 63.1579 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7706 | 98.9737 | 96.5965 | 71.2228 | 5786 | 60 | 5733 | 202 | 187 | 92.5743 | |
| anovak-vg | SNP | * | map_siren | hetalt | 0.0000 | 25.9259 | 0.0000 | 0.0000 | 21 | 60 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_siren | hetalt | 0.0000 | 25.9259 | 0.0000 | 0.0000 | 21 | 60 | 0 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7828 | 98.3598 | 99.2095 | 53.1018 | 3598 | 60 | 3765 | 30 | 4 | 13.3333 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8560 | 99.1874 | 98.5268 | 58.9697 | 7324 | 60 | 7290 | 109 | 104 | 95.4128 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8791 | 98.9737 | 96.8085 | 71.3456 | 5786 | 60 | 5733 | 189 | 174 | 92.0635 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8791 | 98.9737 | 96.8085 | 71.3456 | 5786 | 60 | 5733 | 189 | 174 | 92.0635 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.9097 | 88.6792 | 99.7959 | 48.3122 | 470 | 60 | 489 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.1839 | 87.6797 | 90.7407 | 59.6010 | 427 | 60 | 441 | 45 | 26 | 57.7778 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 13.6986 | 9.0909 | 27.7778 | 57.1429 | 6 | 60 | 5 | 13 | 1 | 7.6923 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | het | 93.3578 | 88.8476 | 98.3505 | 97.1410 | 478 | 60 | 477 | 8 | 5 | 62.5000 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | homalt | 99.6066 | 99.3550 | 99.8595 | 65.9755 | 9242 | 60 | 9242 | 13 | 7 | 53.8462 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9480 | 87.0130 | 99.7519 | 36.5354 | 402 | 60 | 402 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | * | 92.5116 | 88.2122 | 97.2516 | 82.2846 | 449 | 60 | 460 | 13 | 5 | 38.4615 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 60 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.0574 | 87.2068 | 99.7494 | 78.9889 | 409 | 60 | 398 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | homalt | 98.4958 | 97.2985 | 99.7229 | 71.9123 | 2161 | 60 | 2159 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | het | 32.7572 | 85.1852 | 20.2773 | 36.0547 | 345 | 60 | 351 | 1380 | 1369 | 99.2029 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | * | 44.1848 | 30.2326 | 82.0513 | 68.0328 | 26 | 60 | 32 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 80.5715 | 75.2066 | 86.7606 | 55.0063 | 182 | 60 | 308 | 47 | 45 | 95.7447 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 52.5500 | 71.5640 | 41.5188 | 24.1862 | 151 | 60 | 1170 | 1648 | 1641 | 99.5752 | |
| eyeh-varpipe | SNP | tv | map_siren | het | 95.7583 | 99.7903 | 92.0396 | 63.5402 | 28549 | 60 | 28096 | 2430 | 18 | 0.7407 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | het | 95.7880 | 94.1234 | 97.5124 | 84.4692 | 961 | 60 | 980 | 25 | 1 | 4.0000 | |