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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1332 1333 1334 1335 1336 1337 1338 1339 1340 ... 1720 1721 » 66751-66800 / 86044 show all
ciseli-custom	INDEL	D6_15	map_l125_m2_e1	*	55.2000	53.9062	56.5574	92.2687	69	59	69	53	29	54.7170
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	59	0	0	0
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.1021	88.9925	97.6096	61.2654	477	59	490	12	11	91.6667
ciseli-custom	INDEL	*	map_l250_m2_e0	homalt	59.5745	48.6957	76.7123	96.9159	56	59	56	17	11	64.7059
ciseli-custom	INDEL	*	map_l250_m2_e1	homalt	60.0000	49.1379	77.0270	96.9384	57	59	57	17	11	64.7059
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5044	99.4538	99.5551	80.0137	10742	59	10742	48	17	35.4167
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7872	99.6565	99.9183	57.2121	17118	59	17114	14	8	57.1429
cchapple-custom	INDEL	I16_PLUS	*	het	98.4654	97.8293	99.1099	69.2948	2659	59	5122	46	28	60.8696
ckim-gatk	INDEL	*	HG002compoundhet	het	93.4586	98.5589	88.8602	79.6039	4035	59	3789	475	465	97.8947
ckim-gatk	INDEL	*	map_l100_m2_e0	*	97.0660	98.4024	95.7654	89.0665	3634	59	3641	161	20	12.4224
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	92.6592	93.9050	91.4460	61.1858	909	59	898	84	35	41.6667
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	3.2787	0.0000	0.0000	2	59	0	0	0
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.6620	99.4893	95.9007	73.2635	11493	59	11510	492	263	53.4553
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.6620	99.4893	95.9007	73.2635	11493	59	11510	492	263	53.4553
ghariani-varprowl	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	95.6807	99.1251	92.4676	62.1593	6685	59	6715	547	8	1.4625
gduggal-snapplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	59	0	0	0
gduggal-snapfb	SNP	tv	map_l250_m1_e0	homalt	95.8509	93.1075	98.7608	93.4160	797	59	797	10	5	50.0000
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	59	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	22.9299	13.2353	85.7143	26.3158	9	59	12	2	2	100.0000
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	64.3216	84.4327	51.9481	54.2348	320	59	320	296	261	88.1757
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	59	0	0	0
gduggal-snapvard	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het	5.9197	3.2787	30.4348	64.6154	2	59	7	16	14	87.5000
gduggal-snapvard	SNP	tv	map_l250_m2_e0	homalt	96.5358	93.7033	99.5449	88.1007	878	59	875	4	2	50.0000
hfeng-pmm2	SNP	tv	map_l100_m0_e0	het	98.8749	99.1831	98.5687	74.1359	7163	59	7162	104	11	10.5769
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.2134	84.7150	98.7915	90.8715	327	59	327	4	0	0.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4783	99.1237	99.8355	46.7341	6674	59	6676	11	5	45.4545
hfeng-pmm2	INDEL	*	map_l100_m2_e1	*	98.3131	98.4292	98.1972	85.3384	3697	59	3704	68	13	19.1176
hfeng-pmm3	SNP	tv	map_l125_m0_e0	*	99.1700	99.1102	99.2298	75.2152	6572	59	6571	51	7	13.7255
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4351	99.7890	99.0837	56.5880	27900	59	27899	258	21	8.1395
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7223	99.4893	99.9565	63.3985	11493	59	11493	5	5	100.0000
jlack-gatk	INDEL	D6_15	HG002complexvar	het	98.1096	98.1090	98.1101	59.2917	3061	59	3011	58	40	68.9655
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6004	98.3998	98.8017	51.3514	3628	59	3628	44	28	63.6364
raldana-dualsentieon	SNP	tv	map_l150_m0_e0	het	98.1142	97.9247	98.3045	80.9258	2784	59	2783	48	1	2.0833
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3392	99.0283	99.6520	55.6062	6013	59	6013	21	19	90.4762
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	95.9131	95.6458	96.1820	79.8889	1296	59	1184	47	40	85.1064
rpoplin-dv42	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	96.8135	98.9459	94.7711	71.2462	5538	59	5528	305	297	97.3770
rpoplin-dv42	SNP	ti	map_l250_m2_e0	het	98.3531	98.1868	98.5199	88.5673	3195	59	3195	48	29	60.4167
rpoplin-dv42	INDEL	I16_PLUS	HG002complexvar	het	93.4882	90.9774	96.1415	59.6889	605	60	598	24	22	91.6667
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	92.5543	91.9137	93.2039	71.7808	682	60	672	49	46	93.8776
raldana-dualsentieon	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.1509	97.0356	99.2922	64.9042	1964	60	1964	14	0	0.0000
raldana-dualsentieon	SNP	ti	map_l250_m1_e0	het	97.3715	97.9784	96.7720	88.9838	2908	60	2908	97	2	2.0619
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	92.7288	90.2597	95.3368	64.7810	556	60	552	27	25	92.5926
rpoplin-dv42	SNP	tv	map_l100_m1_e0	homalt	99.5567	99.3365	99.7779	62.4922	8983	60	8983	20	18	90.0000
rpoplin-dv42	SNP	tv	map_l100_m2_e0	homalt	99.5649	99.3488	99.7820	64.8909	9154	60	9154	20	18	90.0000
rpoplin-dv42	SNP	tv	map_l100_m2_e1	homalt	99.5691	99.3550	99.7841	64.9074	9242	60	9242	20	18	90.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7421	99.5938	99.8908	50.6550	14710	60	14636	16	7	43.7500
ltrigg-rtg2	INDEL	I16_PLUS	HG002complexvar	hetalt	89.8660	82.0896	99.2701	60.2899	275	60	272	2	2	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	89.5083	82.4047	97.9522	62.7700	281	60	287	6	6	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	96.1107	93.3110	99.0836	51.0924	837	60	865	8	8	100.0000

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