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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1331 1332 1333 1334 1335 1336 1337 1338 1339 ... 1720 1721 » 66701-66750 / 86044 show all
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	0.0000	50.0000	71.4286	0	59	2	2	2	100.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	52.1197	61.4379	45.2558	24.9536	94	59	1097	1327	1322	99.6232
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	68.1726	72.6852	64.1876	28.7853	157	59	794	443	440	99.3228
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	78.4383	93.0670	67.7838	87.7240	792	59	627	298	27	9.0604
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5570	99.4777	99.6364	55.6678	11237	59	11234	41	40	97.5610
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	44.0199	83.7017	29.8625	62.4216	303	59	304	714	698	97.7591
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	59	0	0	0
gduggal-bwaplat	INDEL	I16_PLUS	map_siren	*	46.9565	31.3953	93.1034	90.6149	27	59	27	2	2	100.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	79.3333	66.8539	97.5410	81.8452	119	59	119	3	1	33.3333
gduggal-bwaplat	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	44.4444	28.9157	96.0000	59.6774	24	59	24	1	1	100.0000
jmaeng-gatk	SNP	tv	segdup	*	98.1687	99.3085	97.0548	94.6921	8473	59	8469	257	8	3.1128
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	3.2787	0.0000	0.0000	2	59	0	0	0
ltrigg-rtg1	INDEL	D16_PLUS	*	homalt	98.0769	96.5130	99.6923	55.5890	1633	59	1620	5	5	100.0000
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.4377	95.6458	99.2980	71.4667	1296	59	1273	9	4	44.4444
ltrigg-rtg1	INDEL	D1_5	HG002compoundhet	het	96.9264	96.5856	97.2696	68.4720	1669	59	1710	48	21	43.7500
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	85.9727	76.0163	98.9305	71.6667	187	59	185	2	0	0.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	94.7936	91.4119	98.4351	78.0939	628	59	629	10	5	50.0000
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.3218	94.7834	100.0000	40.0222	1072	59	1079	0	0
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.3750	99.1428	97.6190	80.4477	6824	59	6847	167	2	1.1976
ltrigg-rtg1	SNP	*	map_l125_m1_e0	homalt	99.7779	99.6510	99.9051	65.6341	16846	59	16847	16	16	100.0000
ltrigg-rtg1	SNP	*	map_l125_m2_e0	homalt	99.7839	99.6604	99.9077	68.1589	17316	59	17317	16	16	100.0000
ltrigg-rtg1	SNP	*	map_l125_m2_e1	homalt	99.7859	99.6635	99.9086	68.1960	17473	59	17480	16	16	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	95.3619	93.9050	96.8649	73.4043	909	59	896	29	7	24.1379
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	52.8000	35.8696	100.0000	62.5000	33	59	33	0	0
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	90.2020	86.7117	93.9850	69.4253	385	59	375	24	5	20.8333
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	92.9688	92.3674	93.5780	71.2618	714	59	714	49	29	59.1837
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4954	99.2083	99.7842	37.6168	7393	59	7397	16	10	62.5000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3708	98.3432	98.3984	72.3852	3502	59	3502	57	45	78.9474
ckim-vqsr	INDEL	D1_5	map_l100_m2_e0	*	97.3274	96.9191	97.7392	88.6597	1856	59	1859	43	6	13.9535
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1361	98.7615	99.5135	67.2304	4705	59	4705	23	10	43.4783
dgrover-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.0156	88.8679	99.7963	48.3158	471	59	490	1	1	100.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	homalt	99.5677	99.2411	99.8964	59.9180	7715	59	7715	8	6	75.0000
dgrover-gatk	SNP	ti	map_l150_m2_e0	homalt	99.5587	99.2253	99.8942	70.9853	7557	59	7557	8	6	75.0000
dgrover-gatk	SNP	ti	map_l150_m2_e1	homalt	99.5631	99.2331	99.8953	71.0135	7634	59	7634	8	6	75.0000
qzeng-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	44.0143	35.8696	56.9444	58.6207	33	59	41	31	27	87.0968
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4064	99.1978	99.6159	41.7997	7296	59	7261	28	6	21.4286
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2643	98.8474	99.6847	73.5302	5060	59	5058	16	12	75.0000
raldana-dualsentieon	INDEL	*	map_l125_m1_e0	*	97.7814	97.1998	98.3701	84.9452	2048	59	2052	34	6	17.6471
ltrigg-rtg2	SNP	ti	map_l100_m1_e0	homalt	99.8049	99.6715	99.9386	57.1476	17901	59	17900	11	11	100.0000
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	homalt	99.8031	99.6778	99.9288	59.8461	18250	59	18249	13	13	100.0000
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	homalt	99.8051	99.6810	99.9295	59.8306	18435	59	18434	13	13	100.0000
ltrigg-rtg2	SNP	ti	segdup	*	99.2028	99.6980	98.7126	86.7471	19478	59	19475	254	32	12.5984
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	89.7219	95.2762	84.7795	79.3418	1190	59	1192	214	189	88.3178
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	89.7219	95.2762	84.7795	79.3418	1190	59	1192	214	189	88.3178
qzeng-custom	INDEL	D1_5	map_l150_m2_e0	homalt	85.4395	75.6198	98.1900	87.8035	183	59	217	4	4	100.0000
qzeng-custom	INDEL	D1_5	map_l150_m2_e1	homalt	85.8330	76.2097	98.2379	87.7562	189	59	223	4	4	100.0000
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	94.8382	95.5706	94.1169	36.5552	1273	59	7679	480	470	97.9167
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	96.9438	95.5133	98.4177	45.4467	1256	59	1244	20	12	60.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.3148	95.4405	99.2642	37.6033	1235	59	1349	10	10	100.0000
ciseli-custom	INDEL	D16_PLUS	map_l100_m2_e0	*	44.1674	34.4444	61.5385	89.4737	31	59	32	20	14	70.0000

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