PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
66451-66500 / 86044 show all
raldana-dualsentieonSNP*map_l150_m2_e0homalt
99.7131
99.5213
99.9056
69.8863
116435611643118
72.7273
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9624
98.4167
99.5141
71.6519
34815634821715
88.2353
rpoplin-dv42INDELI6_15lowcmp_SimpleRepeat_diTR_51to200*
55.8140
39.1304
97.2973
67.2566
36563611
100.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7936
99.6701
99.9173
72.0908
169195616921144
28.5714
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7936
99.6701
99.9173
72.0908
169195616921144
28.5714
rpoplin-dv42SNP*map_l250_m2_e0homalt
98.7237
97.9151
99.5458
87.7612
26305626301212
100.0000
rpoplin-dv42SNPtimap_l125_m0_e0homalt
99.2059
98.7531
99.6629
68.6730
44355644351514
93.3333
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
88.8647
90.8347
86.9783
67.1961
555565217877
98.7179
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
98.0678
96.6163
99.5636
56.9165
159956159775
71.4286
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.6418
84.5730
100.0000
45.2055
3075632000
rpoplin-dv42SNPtvmap_l125_m2_e0homalt
99.4329
99.0693
99.7991
69.7738
59615659611212
100.0000
rpoplin-dv42SNPtvmap_l125_m2_e1homalt
99.4382
99.0780
99.8010
69.8334
60185660181212
100.0000
egarrison-hhgaSNPtisegdup*
99.6343
99.7134
99.5554
88.9440
1948156194818725
28.7356
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.9916
95.5731
98.4528
83.7652
12095612091911
57.8947
eyeh-varpipeINDEL*map_l150_m2_e1*
96.5509
96.1084
96.9975
95.6629
13835619065942
71.1864
dgrover-gatkSNPtimap_l150_m1_e0homalt
99.5618
99.2357
99.8901
68.6615
727156727186
75.0000
dgrover-gatkSNPtvHG002complexvarhomalt
99.9637
99.9411
99.9863
22.7977
9505556950401311
84.6154
ckim-isaacINDELD1_5map_l250_m2_e1het
69.4952
54.0984
97.1429
97.2741
66566822
100.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
92.4298
90.2778
94.6869
59.3991
52056499289
32.1429
ckim-vqsrINDELD1_5map_l100_m1_e0*
97.3132
96.9697
97.6592
88.1476
1792561794436
13.9535
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
53.9587
55.9055
52.1429
46.7681
7156736751
76.1194
anovak-vgINDELD16_PLUSmap_l100_m2_e0*
52.2346
37.7778
84.6154
88.4956
34563365
83.3333
anovak-vgINDELD1_5map_l150_m2_e0homalt
85.5172
76.8595
96.3731
89.4304
1865618676
85.7143
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
92.5148
92.3810
92.6491
58.3237
679566685351
96.2264
bgallagher-sentieonSNPtvmap_l125_m0_e0*
98.6421
99.1555
98.1340
76.7581
657556657412519
15.2000
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.5826
97.4026
97.7633
76.4020
21005620984823
47.9167
asubramanian-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
91.9373
88.3333
95.8478
79.7335
424565542421
87.5000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.2022
98.8423
99.5649
69.6516
4781564805219
42.8571
anovak-vgSNPtifunc_cdshomalt
99.1630
98.9384
99.3887
18.9378
52195652033230
93.7500
astatham-gatkINDEL*map_l150_m2_e1het
95.1831
93.9394
96.4602
91.7945
86856872324
12.5000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.2973
98.6962
99.9057
48.2245
423956423941
25.0000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.2696
96.9214
93.6732
86.2372
176356152510374
71.8447
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.2696
96.9214
93.6732
86.2372
176356152510374
71.8447
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
97.1461
96.8750
97.4186
69.7659
17365617364639
84.7826
ckim-gatkINDEL*map_l100_m1_e0*
97.0622
98.4384
95.7240
88.3725
353056353715820
12.6582
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.5329
95.0920
98.0180
79.6517
10855610882217
77.2727
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
92.5151
89.5327
95.7031
72.8238
479564902220
90.9091
ckim-dragenSNP*HG002compoundhet*
99.7929
99.7831
99.8027
41.5217
2576656258045126
50.9804
ciseli-customINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
28.3794
25.3333
32.2581
67.7083
1956204224
57.1429
ciseli-customINDELD1_5map_l150_m2_e1homalt
78.5276
77.4194
79.6680
89.5354
192561924940
81.6327
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2889
98.3993
98.1788
72.3290
35045735046545
69.2308
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.9033
99.2281
98.5807
59.2778
7327577293105100
95.2381
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.6249
99.5200
99.7301
51.4696
1181857118233215
46.8750
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.6384
95.7207
99.6345
39.6588
12755751801917
89.4737
cchapple-customSNPtimap_l250_m0_e0het
95.0637
93.8972
96.2596
94.5783
877578753412
35.2941
ciseli-customINDEL*map_l250_m1_e0homalt
59.4286
47.7064
78.7879
96.7977
525752148
57.1429
ciseli-customSNP*segduphomalt
98.3606
99.4694
97.2762
88.7149
106865710607297168
56.5657
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8754
99.0250
98.7263
71.7769
57895757367467
90.5405