PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66201-66250 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.8446 | 80.7971 | 98.6726 | 90.8055 | 223 | 53 | 223 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.0411 | 92.8475 | 85.5346 | 72.4341 | 688 | 53 | 680 | 115 | 105 | 91.3043 | |
| raldana-dualsentieon | SNP | * | map_l100_m0_e0 | homalt | 99.7198 | 99.5353 | 99.9050 | 58.6521 | 11566 | 54 | 11566 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.0221 | 96.4380 | 99.6592 | 65.6762 | 1462 | 54 | 1462 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.7738 | 84.9582 | 97.4441 | 50.1592 | 305 | 54 | 305 | 8 | 6 | 75.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.8218 | 96.4958 | 99.1848 | 75.0551 | 1487 | 54 | 1460 | 12 | 6 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 71.9478 | 78.1377 | 66.6667 | 74.2938 | 193 | 54 | 182 | 91 | 90 | 98.9011 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.4391 | 88.9344 | 87.9493 | 79.5592 | 434 | 54 | 416 | 57 | 55 | 96.4912 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | homalt | 32.9688 | 92.1283 | 20.0767 | 74.2148 | 632 | 54 | 628 | 2500 | 2465 | 98.6000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | * | 97.8100 | 97.5410 | 98.0804 | 98.3346 | 2142 | 54 | 2146 | 42 | 15 | 35.7143 | |
| ndellapenna-hhga | INDEL | * | map_siren | hetalt | 85.8846 | 78.1377 | 95.3368 | 88.2532 | 193 | 54 | 184 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 81.1020 | 68.6047 | 99.1667 | 72.0280 | 118 | 54 | 119 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.5778 | 96.7372 | 90.6183 | 55.9107 | 1601 | 54 | 1700 | 176 | 163 | 92.6136 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | hetalt | 90.3719 | 83.8806 | 97.9522 | 65.2019 | 281 | 54 | 287 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.8670 | 86.0825 | 98.4848 | 65.2997 | 334 | 54 | 325 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | homalt | 99.7245 | 99.5210 | 99.9288 | 67.8086 | 11219 | 54 | 11221 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | homalt | 99.7345 | 99.5384 | 99.9314 | 70.4233 | 11645 | 54 | 11647 | 8 | 7 | 87.5000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | homalt | 99.7374 | 99.5434 | 99.9321 | 70.4609 | 11773 | 54 | 11779 | 8 | 7 | 87.5000 | |
| qzeng-custom | INDEL | * | map_siren | hetalt | 87.7273 | 78.1377 | 100.0000 | 88.1671 | 193 | 54 | 51 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.1461 | 96.4333 | 91.9648 | 90.4466 | 1460 | 54 | 1568 | 137 | 36 | 26.2774 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 93.9573 | 93.1904 | 94.7368 | 87.3601 | 739 | 54 | 738 | 41 | 29 | 70.7317 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5234 | 99.1268 | 97.9273 | 65.2174 | 6130 | 54 | 6142 | 130 | 33 | 25.3846 | |
| jpowers-varprowl | SNP | ti | func_cds | het | 99.3416 | 99.3650 | 99.3183 | 29.2650 | 8450 | 54 | 8450 | 58 | 2 | 3.4483 | |
| jpowers-varprowl | SNP | ti | map_l250_m1_e0 | homalt | 98.1979 | 96.6397 | 99.8072 | 88.8547 | 1553 | 54 | 1553 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1048 | 98.5238 | 99.6927 | 45.3838 | 3604 | 54 | 3568 | 11 | 2 | 18.1818 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0126 | 98.2938 | 99.7419 | 42.5046 | 3111 | 54 | 3091 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5415 | 89.8113 | 99.7976 | 44.9275 | 476 | 54 | 493 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0035 | 98.2095 | 95.8267 | 71.5438 | 2962 | 54 | 3008 | 131 | 4 | 3.0534 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | het | 96.5544 | 94.7111 | 98.4709 | 76.6706 | 967 | 54 | 966 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m1_e0 | * | 97.5313 | 95.9641 | 99.1506 | 83.9469 | 1284 | 54 | 1284 | 11 | 1 | 9.0909 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.8182 | 0.0000 | 0.0000 | 1 | 54 | 0 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2415 | 98.8665 | 99.6193 | 67.1895 | 4710 | 54 | 4710 | 18 | 5 | 27.7778 | |
| jmaeng-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.6389 | 99.6975 | 99.5803 | 59.3397 | 17797 | 54 | 17796 | 75 | 5 | 6.6667 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | homalt | 98.9039 | 98.0442 | 99.7788 | 72.9781 | 2707 | 54 | 2707 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e1 | homalt | 96.1924 | 93.0233 | 99.5851 | 87.7995 | 720 | 54 | 720 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2749 | 98.6108 | 99.9480 | 59.6368 | 3833 | 54 | 3843 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6198 | 95.9122 | 99.3894 | 60.1406 | 1267 | 54 | 1465 | 9 | 5 | 55.5556 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 52.8000 | 37.9310 | 86.8421 | 99.9569 | 33 | 54 | 33 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | * | 52.2205 | 37.9310 | 83.7838 | 88.2166 | 33 | 54 | 31 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 30.6011 | 28.0000 | 33.7349 | 46.7949 | 21 | 54 | 28 | 55 | 49 | 89.0909 | |
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | homalt | 86.0971 | 79.0698 | 94.4954 | 84.8401 | 204 | 54 | 206 | 12 | 11 | 91.6667 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 35.7143 | 0.0000 | 0.0000 | 30 | 54 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5318 | 97.5161 | 97.5474 | 64.9131 | 2120 | 54 | 2108 | 53 | 24 | 45.2830 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.8721 | 97.9866 | 99.7738 | 42.6347 | 2628 | 54 | 2646 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 93.3542 | 87.6993 | 99.7886 | 34.9381 | 385 | 54 | 472 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.2803 | 99.4811 | 99.0803 | 50.1719 | 10353 | 54 | 10342 | 96 | 88 | 91.6667 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 96.2844 | 93.7931 | 98.9117 | 88.0681 | 816 | 54 | 818 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 93.8042 | 89.3701 | 98.7013 | 89.4569 | 454 | 54 | 456 | 6 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | * | 88.0846 | 80.3636 | 97.4468 | 85.8519 | 221 | 54 | 229 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 14.4928 | 8.4746 | 50.0000 | 68.4211 | 5 | 54 | 3 | 3 | 3 | 100.0000 | |