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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1320 1321 1322 1323 1324 1325 1326 1327 1328 ... 1720 1721 » 66151-66200 / 86044 show all
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.0229	97.8447	98.2019	70.5216	2406	53	2403	44	6	13.6364
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.2624	99.1501	99.3749	64.2935	6183	53	6200	39	5	12.8205
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.7510	97.9167	99.5997	47.1770	2491	53	2488	10	1	10.0000
mlin-fermikit	SNP	tv	HG002compoundhet	homalt	90.3108	98.4357	83.4250	51.0104	3335	53	3337	663	585	88.2353
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.9278	99.0227	93.0204	76.6292	5370	53	5371	403	345	85.6079
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.9278	99.0227	93.0204	76.6292	5370	53	5371	403	345	85.6079
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	84.5989	77.2532	93.4884	70.0139	180	53	201	14	12	85.7143
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	*	63.5631	57.2581	71.4286	99.8537	71	53	65	26	10	38.4615
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	*	81.9633	76.1261	88.7701	48.1994	169	53	166	21	16	76.1905
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	3.6364	0.0000	0.0000	2	53	0	0	0
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	85.2750	89.1170	81.7505	62.2628	434	53	439	98	30	30.6122
ciseli-custom	INDEL	D6_15	map_l100_m0_e0	*	52.0249	48.5437	56.0440	91.5428	50	53	51	40	23	57.5000
ciseli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	87.2686	88.7234	85.8607	64.7399	417	53	419	69	36	52.1739
cchapple-custom	INDEL	*	map_l150_m2_e0	*	95.3298	96.2358	94.4406	89.8140	1355	53	1376	81	16	19.7531
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	74.1595	60.7407	95.1883	35.4926	82	53	455	23	20	86.9565
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	98.8470	98.2089	99.4934	48.2524	2906	53	2946	15	4	26.6667
ckim-dragen	INDEL	*	HG002complexvar	homalt	99.5434	99.8039	99.2843	57.4048	26974	53	26911	194	188	96.9072
ckim-dragen	INDEL	*	map_l150_m2_e1	*	96.1137	96.3169	95.9113	91.3208	1386	53	1384	59	11	18.6441
ghariani-varprowl	SNP	ti	segdup	het	97.4023	99.5594	95.3366	92.6943	11977	53	11980	586	2	0.3413
hfeng-pmm1	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.9642	97.6007	96.3360	64.2948	2156	53	2156	82	77	93.9024
gduggal-snapplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	53	0	0	0
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	91.9883	99.2888	85.6879	49.6867	7399	53	7430	1241	43	3.4650
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	82.2695	94.2516	72.9904	73.0327	869	53	908	336	30	8.9286
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	86.5961	80.0752	94.2731	78.2359	213	53	214	13	13	100.0000
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	53	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	73.1549	89.1170	62.0422	57.0748	434	53	559	342	258	75.4386
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	36.9048	0.0000	0.0000	31	53	0	0	0
gduggal-snapvard	INDEL	I1_5	map_l100_m2_e1	homalt	94.4587	90.1852	99.1573	74.3238	487	53	706	6	3	50.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	13.1148	0.0000	0.0000	8	53	0	0	0
gduggal-snapvard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	91.4497	97.5621	86.0581	72.6726	2121	53	2074	336	8	2.3810
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	het	17.8082	19.6970	16.2500	98.7063	13	53	13	67	2	2.9851
gduggal-snapvard	INDEL	*	map_l100_m0_e0	het	83.1200	94.8090	73.9970	89.3957	968	53	1457	512	171	33.3984
gduggal-snapvard	INDEL	D16_PLUS	segdup	*	14.0845	8.6207	38.4615	94.9807	5	53	5	8	4	50.0000
ghariani-varprowl	INDEL	*	map_l125_m2_e1	homalt	95.5600	93.1525	98.0952	83.9590	721	53	721	14	5	35.7143
ghariani-varprowl	INDEL	D16_PLUS	map_siren	*	63.0655	62.9371	63.1944	94.7137	90	53	91	53	38	71.6981
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	31.8050	60.7407	21.5426	49.5302	82	53	81	295	292	98.9831
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7378	99.5218	99.9547	55.5264	11031	53	11028	5	1	20.0000
hfeng-pmm3	SNP	ti	map_l150_m0_e0	het	99.0183	98.9602	99.0764	81.1323	5044	53	5042	47	2	4.2553
jlack-gatk	SNP	ti	map_l250_m2_e0	het	92.2213	98.3712	86.7950	94.0302	3201	53	3201	487	40	8.2136
hfeng-pmm2	SNP	tv	map_l125_m0_e0	het	98.4153	98.7957	98.0379	79.2988	4348	53	4347	87	9	10.3448
hfeng-pmm3	INDEL	*	map_siren	het	98.9897	98.8243	99.1556	80.3605	4455	53	4462	38	4	10.5263
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	96.6892	96.0886	97.2973	79.6160	1302	53	1188	33	29	87.8788
hfeng-pmm1	SNP	*	segdup	het	99.6248	99.6939	99.5558	89.5848	17264	53	17258	77	0	0.0000
raldana-dualsentieon	SNP	ti	HG002complexvar	homalt	99.9811	99.9726	99.9897	18.3281	193410	53	193401	20	20	100.0000
raldana-dualsentieon	SNP	ti	map_l100_m1_e0	homalt	99.8161	99.7049	99.9275	56.2318	17907	53	17907	13	12	92.3077
raldana-dualsentieon	SNP	ti	map_l100_m2_e0	homalt	99.8196	99.7105	99.9288	58.8267	18256	53	18256	13	12	92.3077
raldana-dualsentieon	SNP	ti	map_l100_m2_e1	homalt	99.8214	99.7134	99.9296	58.8080	18441	53	18441	13	12	92.3077
rpoplin-dv42	INDEL	*	map_l125_m2_e1	*	98.0600	97.6180	98.5061	98.7184	2172	53	2176	33	14	42.4242
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	91.5664	93.9498	89.3010	79.9025	823	53	626	75	74	98.6667
raldana-dualsentieon	INDEL	D6_15	HG002complexvar	hetalt	97.2668	94.7680	99.9010	47.1204	960	53	1009	1	1	100.0000

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