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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65651-65700 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5614 | 34.6667 | 40.9836 | 65.1429 | 26 | 49 | 25 | 36 | 31 | 86.1111 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 79.2133 | 76.5550 | 82.0628 | 67.6812 | 160 | 49 | 183 | 40 | 33 | 82.5000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 68.2551 | 91.4186 | 54.4569 | 32.9265 | 522 | 49 | 2963 | 2478 | 2470 | 99.6772 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | * | 62.1212 | 45.5556 | 97.6190 | 95.9184 | 41 | 49 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 49 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0866 | 98.7946 | 99.3804 | 48.6184 | 4016 | 49 | 4010 | 25 | 11 | 44.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m2_e1 | homalt | 98.3428 | 97.2348 | 99.4764 | 88.0642 | 1723 | 49 | 1710 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.0619 | 97.7461 | 96.3872 | 69.9220 | 2125 | 49 | 2081 | 78 | 11 | 14.1026 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4992 | 99.3239 | 93.8307 | 37.7780 | 7198 | 49 | 7194 | 473 | 470 | 99.3658 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.6945 | 66.8919 | 98.5577 | 39.0625 | 99 | 49 | 615 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 70.5314 | 59.8361 | 85.8824 | 65.4472 | 73 | 49 | 73 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | * | 97.5922 | 96.4181 | 98.7952 | 83.8737 | 1319 | 49 | 1312 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 84.1131 | 77.3148 | 92.2222 | 50.6849 | 167 | 49 | 166 | 14 | 14 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | homalt | 98.9985 | 98.1972 | 99.8130 | 89.0383 | 2669 | 49 | 2669 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | het | 95.6334 | 94.2690 | 97.0379 | 88.0521 | 806 | 49 | 819 | 25 | 1 | 4.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 74.4949 | 59.8361 | 98.6667 | 81.4815 | 73 | 49 | 74 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.5657 | 90.8582 | 98.5887 | 60.6037 | 487 | 49 | 489 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m1_e0 | * | 97.4217 | 95.4963 | 99.4264 | 79.7601 | 1039 | 49 | 1040 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2315 | 96.7180 | 99.7931 | 31.3447 | 1444 | 49 | 1447 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.0004 | 98.7335 | 95.3271 | 68.1496 | 3820 | 49 | 3774 | 185 | 180 | 97.2973 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4405 | 99.5463 | 99.3348 | 79.5031 | 10752 | 49 | 10752 | 72 | 13 | 18.0556 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2132 | 98.0073 | 98.4200 | 74.3056 | 2410 | 49 | 2367 | 38 | 26 | 68.4211 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.9428 | 76.2136 | 95.9302 | 45.5696 | 157 | 49 | 165 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_siren | * | 50.3401 | 43.0233 | 60.6557 | 78.9655 | 37 | 49 | 37 | 24 | 24 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 67.0103 | 57.0175 | 81.2500 | 85.1852 | 65 | 49 | 65 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.4762 | 60.4839 | 73.7864 | 99.9217 | 75 | 49 | 76 | 27 | 19 | 70.3704 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 49 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e0 | * | 94.0092 | 93.5780 | 94.4444 | 89.3939 | 714 | 49 | 714 | 42 | 21 | 50.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7499 | 93.8209 | 99.8677 | 23.9437 | 744 | 49 | 755 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.7263 | 90.1408 | 97.6087 | 73.5936 | 448 | 49 | 449 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.2865 | 92.5982 | 98.1356 | 76.2957 | 613 | 49 | 579 | 11 | 8 | 72.7273 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7559 | 99.5579 | 99.9547 | 55.7919 | 11035 | 49 | 11032 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5910 | 99.3338 | 99.8496 | 31.5262 | 7306 | 49 | 7302 | 11 | 3 | 27.2727 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 88.6737 | 96.3158 | 82.1551 | 76.7252 | 1281 | 49 | 1197 | 260 | 253 | 97.3077 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9394 | 98.6710 | 99.2092 | 50.5195 | 3638 | 49 | 3638 | 29 | 26 | 89.6552 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | het | 97.0089 | 97.1644 | 96.8539 | 67.7653 | 1679 | 49 | 1724 | 56 | 27 | 48.2143 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3714 | 93.4840 | 99.4429 | 53.4069 | 703 | 49 | 714 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8496 | 98.7433 | 98.9562 | 63.8705 | 3850 | 49 | 3887 | 41 | 14 | 34.1463 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.1502 | 87.3057 | 95.3488 | 87.7362 | 337 | 49 | 328 | 16 | 1 | 6.2500 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.1814 | 73.6559 | 85.6031 | 65.5957 | 137 | 49 | 220 | 37 | 23 | 62.1622 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.5915 | 71.0059 | 70.1818 | 64.6075 | 120 | 49 | 193 | 82 | 77 | 93.9024 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 90.5188 | 94.0606 | 87.2340 | 71.9711 | 776 | 49 | 779 | 114 | 113 | 99.1228 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 90.5188 | 94.0606 | 87.2340 | 71.9711 | 776 | 49 | 779 | 114 | 113 | 99.1228 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.2223 | 89.4397 | 79.5802 | 65.5942 | 415 | 49 | 417 | 107 | 106 | 99.0654 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.4995 | 97.5791 | 95.4436 | 69.9221 | 1975 | 49 | 1990 | 95 | 2 | 2.1053 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2583 | 99.5434 | 98.9748 | 37.3981 | 10683 | 49 | 10716 | 111 | 5 | 4.5045 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5296 | 98.8181 | 98.2427 | 79.9696 | 4097 | 49 | 4137 | 74 | 2 | 2.7027 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.3487 | 98.9909 | 99.7091 | 60.6090 | 4807 | 49 | 4798 | 14 | 2 | 14.2857 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.7132 | 98.1565 | 99.2762 | 66.6200 | 2609 | 49 | 2606 | 19 | 10 | 52.6316 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.2276 | 87.3057 | 93.3518 | 89.1559 | 337 | 49 | 337 | 24 | 15 | 62.5000 | |