PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65501-65550 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | * | 98.5782 | 98.2244 | 98.9346 | 87.7185 | 2600 | 47 | 2600 | 28 | 6 | 21.4286 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8719 | 99.3172 | 98.4305 | 81.7659 | 6836 | 47 | 6836 | 109 | 22 | 20.1835 | |
| hfeng-pmm2 | SNP | ti | HG002complexvar | homalt | 99.9798 | 99.9757 | 99.9840 | 18.5051 | 193416 | 47 | 193407 | 31 | 31 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2169 | 98.7151 | 99.7238 | 50.1102 | 3611 | 47 | 3611 | 10 | 4 | 40.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.4127 | 92.9323 | 89.9420 | 85.4816 | 618 | 47 | 465 | 52 | 42 | 80.7692 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.5238 | 93.1587 | 98.0122 | 81.7675 | 640 | 47 | 641 | 13 | 7 | 53.8462 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.7720 | 96.1851 | 99.4123 | 57.0191 | 1185 | 47 | 1184 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 91.6035 | 89.2202 | 94.1176 | 80.0098 | 389 | 47 | 384 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 60.0000 | 43.3735 | 97.2973 | 32.7273 | 36 | 47 | 36 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | * | 97.4296 | 96.9290 | 97.9355 | 98.6839 | 1515 | 48 | 1518 | 32 | 12 | 37.5000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.0567 | 88.9908 | 91.1483 | 82.8689 | 388 | 48 | 381 | 37 | 24 | 64.8649 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | homalt | 65.3465 | 57.8947 | 75.0000 | 76.9029 | 66 | 48 | 66 | 22 | 21 | 95.4545 | |
| mlin-fermikit | SNP | * | * | hetalt | 97.1091 | 94.4891 | 99.8786 | 32.2368 | 823 | 48 | 823 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | HG002compoundhet | hetalt | 97.1360 | 94.4316 | 100.0000 | 20.8171 | 814 | 48 | 814 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9023 | 98.7622 | 99.0427 | 58.2117 | 3830 | 48 | 3828 | 37 | 32 | 86.4865 | |
| mlin-fermikit | SNP | tv | * | hetalt | 97.1091 | 94.4891 | 99.8786 | 32.2368 | 823 | 48 | 823 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | HG002compoundhet | hetalt | 97.1360 | 94.4316 | 100.0000 | 20.8171 | 814 | 48 | 814 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.7151 | 96.2963 | 91.2688 | 89.1952 | 1248 | 48 | 1338 | 128 | 35 | 27.3438 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.0126 | 73.1844 | 98.6014 | 27.7778 | 131 | 48 | 141 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8830 | 98.6107 | 99.1567 | 58.6659 | 3407 | 48 | 3410 | 29 | 25 | 86.2069 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2704 | 99.1149 | 99.4264 | 74.8452 | 5375 | 48 | 5373 | 31 | 27 | 87.0968 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2704 | 99.1149 | 99.4264 | 74.8452 | 5375 | 48 | 5373 | 31 | 27 | 87.0968 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 83.9237 | 76.2376 | 93.3333 | 96.6468 | 154 | 48 | 168 | 12 | 11 | 91.6667 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.2450 | 99.0076 | 99.4836 | 62.5686 | 4789 | 48 | 4816 | 25 | 3 | 12.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | het | 97.9207 | 97.1446 | 98.7093 | 76.2482 | 1633 | 48 | 1606 | 21 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.3832 | 98.7739 | 100.0000 | 75.8608 | 3867 | 48 | 3884 | 0 | 0 | ||
| jli-custom | SNP | * | HG002compoundhet | het | 99.6122 | 99.6614 | 99.5631 | 45.6634 | 14130 | 48 | 14128 | 62 | 24 | 38.7097 | |
| jli-custom | SNP | ti | map_l125_m2_e0 | homalt | 99.7530 | 99.5774 | 99.9293 | 65.1271 | 11310 | 48 | 11310 | 8 | 8 | 100.0000 | |
| jli-custom | SNP | ti | map_l125_m2_e1 | homalt | 99.7552 | 99.5811 | 99.9299 | 65.1529 | 11410 | 48 | 11410 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002complexvar | * | 97.4235 | 97.0785 | 97.7709 | 66.8650 | 1595 | 48 | 1579 | 36 | 31 | 86.1111 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7075 | 98.2437 | 99.1757 | 52.7025 | 2685 | 48 | 2647 | 22 | 8 | 36.3636 | |
| jpowers-varprowl | INDEL | D6_15 | segdup | hetalt | 0.0000 | 2.0408 | 0.0000 | 0.0000 | 1 | 48 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.9254 | 60.6557 | 67.5676 | 77.1134 | 74 | 48 | 75 | 36 | 35 | 97.2222 | |
| jpowers-varprowl | INDEL | I1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 48 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.2548 | 98.6087 | 97.9035 | 45.6956 | 3402 | 48 | 3409 | 73 | 33 | 45.2055 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 76.5568 | 89.1892 | 67.0588 | 70.9331 | 396 | 48 | 399 | 196 | 192 | 97.9592 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.0511 | 70.7317 | 27.9343 | 65.1961 | 116 | 48 | 119 | 307 | 306 | 99.6743 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 48 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m1_e0 | * | 93.8289 | 93.3054 | 94.3583 | 88.8610 | 669 | 48 | 669 | 40 | 20 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.4114 | 96.3910 | 96.4318 | 79.9786 | 1282 | 48 | 1081 | 40 | 36 | 90.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | * | 97.8855 | 96.4912 | 99.3208 | 80.2091 | 1320 | 48 | 1316 | 9 | 3 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | * | 97.8909 | 96.5591 | 99.2598 | 80.3577 | 1347 | 48 | 1341 | 10 | 3 | 30.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6901 | 96.3664 | 99.0506 | 57.6833 | 1273 | 48 | 1252 | 12 | 6 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5382 | 99.2871 | 99.7905 | 44.9407 | 6685 | 48 | 6668 | 14 | 4 | 28.5714 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 35.1351 | 0.0000 | 0.0000 | 26 | 48 | 0 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m1_e0 | homalt | 99.2995 | 98.7836 | 99.8207 | 68.8894 | 3898 | 48 | 3898 | 7 | 5 | 71.4286 | |
| astatham-gatk | SNP | tv | map_l150_m2_e0 | homalt | 99.3231 | 98.8244 | 99.8268 | 71.2518 | 4035 | 48 | 4035 | 7 | 5 | 71.4286 | |
| astatham-gatk | SNP | tv | map_l150_m2_e1 | homalt | 99.3315 | 98.8389 | 99.8290 | 71.2267 | 4086 | 48 | 4086 | 7 | 5 | 71.4286 | |